Spectroscopy of molecular junctions

In this tutorial review we present in detail recent studies in which molecular junctions were simultaneously probed by conductance measurements and optical spectroscopy methods such as electroluminescence (EL) and Raman scattering. The advantages of combining these experimental approaches to improve our understanding of charge transport through molecular junctions are discussed and routes for future developments are suggested.     

Finite-difference time-domain simulation of light induced charge dynamics in silver nanoparticles

We use a finite-difference time-domain (FDTD) approach to describe and control light-induced charge dynamics via two constructs consisting of nanoscale silver cylinders. The charge dynamics is found to be significantly different from the energy dynamics intensively studied in the past in similar systems. It is shown that two-color sources with a tunable relative phase introduce the opportunity to control the charge dynamics via a simple and interesting control mechanism, namely, the time evolution of the charge is directly tied to the instantaneous value of the source fields. Hence, our ability to shape laser pulses and tailor their relative phases and amplitudes translates directly into the possibility of manipulating charge oscillations within metal nanoparticle arrays.     

Protic ionic liquids with fluorous anions: physicochemical properties and self-assembly nanostructure

A series of 11 new protic ionic liquids with fluorous anions (FPILs) have been identified and their self-assembled nanostructure, thermal phase transitions and physicochemical properties were investigated. To the best of our knowledge this is the first time that fluorocarbon domains have been reported in PILs. The FPILs were prepared from a range of hydrocarbon alkyl and heterocyclic amine cations in combination with the perfluorinated anions heptafluorobutyrate and pentadecafluorooctanoate. The nanostructure of the FPILs was established by using small- and wide-angle X-ray scattering (SAXS and WAXS). In the liquid state many of the FPILs showed an intermediate range order, or self-assembled nanostructure, resulting from segregation of the polar and nonpolar hydrocarbon and fluorocarbon domains of the ionic liquid. In addition, the physicochemical properties of the FPILs were determined including the melting point (T(m)), glass transition (T(g)), devitrification temperature (T(c)), thermal stability and the density ρ, viscosity η, air/liquid surface tension γ(LV), refractive index n(D), and ionic conductivity κ. The FPILs were mostly solids at room temperature, however two examples 2-pyrrolidinonium heptafluorobutyrate (PyrroBF) and pyrrolidinium heptafluorobutyrate (PyrrBF) were liquids at room temperature and all of the FPILs melted below 80 °C. Four of the FPILs exhibited a glass transition. The two liquids at room temperature, PyrroBF and PyrrBF, had a similar density, surface tension and refractive index but their viscosity and ionic conductivity were very different due to dissimilar self-assembled nanostructure.     

The string landscape: On formulas for counting vacua

We derive formulas for counting certain classes of vacua in the string/M theory landscape. We do so in the context of the moduli space of M-theory compactifications on singular manifolds with _G2$G_2$ holonomy. Particularly, we count the numbers of gauge theories with different gauge groups but equal numbers of U(1)$U(1)$ factors which are dual to each other. The vacua correspond to various symmetry breaking patterns of grand unified theories. Counting these dual vacua is equivalent to counting the number of conjugacy classes of elements of finite order inside Lie groups. We also point out certain cases where the conventional expectation is that symmetry breaking patterns by Wilson lines and Higgs fields are the same, but we show they are in fact different.     

The Effect of Cluster Size on the Intra-Cluster Ionic Polymerization Process

Polyaromatic hydrocarbons (PAHs) are widespread in the interstellar medium (ISM). The abundance and relevance of PAHs call for a clear understanding of their formation mechanisms, which, to date, have not been completely deciphered. Of particular interest is the formation of benzene, the basic building block of PAHs. It has been shown that the ionization of neutral clusters can lead to an intra-cluster ionic polymerization process that results in molecular growth. Ab-initio molecular dynamics (AIMD) studies in clusters consisting of 3–6 units of acetylene modeling ionization events under ISM conditions have shown maximum aggregation of three acetylene molecules forming bonded C₆H₆⁺ species; the larger the number of acetylene molecules, the higher the production of C₆H₆⁺. These results lead to the question of whether clusters larger than those studied thus far promote aggregation beyond three acetylene units and whether larger clusters can result in higher C₆H₆⁺ production. In this study, we report results from AIMD simulations modeling the ionization of 10 and 20 acetylene clusters. The simulations show aggregation of up to four acetylene units producing bonded C₈H₈⁺. Interestingly, C₈H₈⁺ bicyclic species were identified, setting a precedent for their astrochemical identification. Comparable reactivity rates were shown with 10 and 20 acetylene clusters.     

Ideals and Clots in Pointed Regular Categories

We clarify the relationship between ideals, clots, and normal subobjects in a pointed regular category with finite coproducts. Partially supported by South African NRF Research partially supported by the Hungarian National Foundation for Scientific Research grant no. K61007.     

A simplicial approach to factorization systems and Kurosh-Amitsur radicals

Regarding categories as simplicial sets via the nerve functor, we extend the notion of a factorization system from morphisms in a category, to 1-simplexes in an arbitrary simplicial set. Applied to what we call the simplicial set of short exact sequences, it gives the notion of Kurosh-Amitsur radical. That is, we present a unified approach to factorization systems and radicals.     

Ultrafast nonadiabatic photodissociation dynamics of F2 in solid Ar

We explore the ultrafast spin-flip dynamics in a diatomic molecule imbedded in a rare gas matrix using the combination of a quantum mechanical and a semiclassical surface hopping method. Specifically, we investigate (1) the extent to which the phenomenon of electronically-localized eigenstates in strongly-coupled manifolds survives in the presence of rapid decay and a multitude of electronically coupled states; (2) the ability of the surface hopping method to predict the short time dynamics; and (3) the time range over which frozen lattice models are valid. Our results point to the active role played by a large number of coupled electronic states in the F₂/Ar dynamics while substantiating our confidence in the validity of the popular surface hopping approach for the system considered.     

Disrupting the MAD2L2-Rev1 Complex Enhances Cell Death upon DNA Damage

DNA-damaging chemotherapy agents such as cisplatin have been the first line of treatment for cancer for decades. While chemotherapy can be very effective, its long-term success is often reduced by intrinsic and acquired drug resistance, accompanied by chemotherapy-resistant secondary malignancies. Although the mechanisms causing drug resistance are quite distinct, they are directly connected to mutagenic translesion synthesis (TLS). The TLS pathway promotes DNA damage tolerance by supporting both replication opposite to a lesion and inaccurate single-strand gap filling. Interestingly, inhibiting TLS reduces both cisplatin resistance and secondary tumor formation. Therefore, TLS targeting is a promising strategy for improving chemotherapy. MAD2L2 (i.e., Rev7) is a central protein in TLS. It is an essential component of the TLS polymerase zeta (ζ), and it forms a regulatory complex with Rev1 polymerase. Here we present the discovery of two small molecules, c#2 and c#3, that directly bind both in vitro and in vivo to MAD2L2 and influence its activity. Both molecules sensitize lung cancer cell lines to cisplatin, disrupt the formation of the MAD2L2-Rev1 complex and increase DNA damage, hence underlining their potential as lead compounds for developing novel TLS inhibitors for improving chemotherapy treatments.