Peroxisome proliferator-activated receptor alpha antagonism inhibits hepatitis C virus replication

Hepatitis C virus (HCV) is a global health problem and a leading cause of liver disease. Here, we demonstrate that the replication of HCV replicon RNA in Huh-7 cells is inhibited by a peroxisome proliferator-activated receptor (PPAR) antagonist, 2-chloro-5-nitro-N-(pyridyl)benzamide (BA). Downregulation of PPARgamma with RNA interference approaches had no effect on HCV replication in Huh-7 cells, whereas PPARalpha downregulation inhibited HCV replication. Fluorescence and coherent anti-Stokes Raman scattering (CARS) microscopy demonstrate a clear buildup of lipids upon treatment with BA. These observations are consistent with the misregulation of lipid metabolism, phospholipid secretion, cholesterol catabolism, and triglyceride clearance events associated with the inhibition of PPARalpha. The inhibition of HCV replication by BA may result from disrupting lipidation of host proteins associated with the HCV replication complex or, more generally, by disrupting the membranous web where HCV replicates.     

Studying the signaling role of 2-oxoglutaric acid using analogs that mimic the ketone and ketal forms of 2-oxoglutaric acid

2-Oxoglutaric acid (2-OG), a Krebs cycle intermediate, is a signaling molecule in many organisms. To determine which form of 2-OG, the ketone or the ketal form, is responsible for its signaling function, we have synthesized and characterized various 2-OG analogs. Only 2-methylenepentanedioic acid (2-MPA), which resembles closely the ketone form of 2-OG, is able to elicit cell responses in the cyanobacterium Anabaena by inducing nitrogen-fixing cells called heterocysts. None of the analogs mimicking the ketal form of 2-OG are able to induce heterocysts because none of them are able to interact with NtcA, a 2-OG sensor. NtcA interacts with 2-MPA and 2-OG in a similar manner, and it is necessary for heterocyst differentiation induced by 2-MPA. Therefore, it is primarily the ketone form that is responsible for the signaling role of 2-OG in Anabaena.     

Impact of carbamylation on type I collagen conformational structure and its ability to activate human polymorphonuclear neutrophils

Carbamylation by urea-derived cyanate is a posttranslational modification of proteins increasing during chronic renal insufficiency, which alters structural and functional properties of proteins and modifies their interactions with cells. We report here the major structural alterations of type I collagen induced by carbamylation. Biophysical methods revealed that carbamylated collagen retained its triple-helical structure, but that slight changes destabilized some regions within the triple helix and decreased its ability to polymerize into normal fibrils. These changes were associated with the incapacity of carbamylated collagen to stimulate polymorphonuclear neutrophil oxidative functions. This process involved their interaction with LFA-1 integrin, but no subsequent p(125)FAK phosphorylation. Carbamylation of collagen might alter interactions between collagen and inflammatory cells in vivo and interfere with the normal remodeling of extracellular matrix, thus participating in the pathophysiological processes occurring during renal insufficiency.     

Modeling of Nuclear Species Diffusion Through Cement-Based Materials

The use of cement-based materials for radioactive waste confinement and storage must rest on precise measurements of their physical and chemical properties. An important property is the diffusivity of tritium in its liquid form (tritiated water) through a sample considered as representative. Here, we report quantitatively the effect of radioactive decay compared to the effective diffusion coefficient on tritium diffusion. The numerical model was validated by comparing it to experimental data. We found that, in the worst case scenario, the calculated effective diffusion coefficient of tritiated water based on the classical analytical solution to Fick’s law is underestimated by more than 20 %, compared with the results provided by the numerical model, which accounts for the radioactive decay within the material.     

On the Amplitude Equations for Weakly Nonlinear Surface Waves

Nonlocal generalizations of Burgers’ equation were derived in earlier work by Hunter (Contemp Math, vol 100, pp 185–202. AMS, 1989), and more recently by Benzoni-Gavage and Rosini (Comput Math Appl 57(3–4):1463–1484, 2009), as weakly nonlinear amplitude equations for hyperbolic boundary value problems admitting linear surface waves. The local-in-time well-posedness of such equations in Sobolev spaces was proved by Benzoni-Gavage (Differ Integr Equ 22(3–4):303–320, 2009) under an appropriate stability condition originally pointed out by Hunter. The same stability condition has also been shown to be necessary for well-posedness in Sobolev spaces in a previous work of the authors in collaboration with Tzvetkov (Benzoni-Gavage et al. in Adv Math 227(6):2220–2240, 2011). In this article, we show how the verification of Hunter’s stability condition follows from natural stability assumptions on the original hyperbolic boundary value problem, thus avoiding lengthy computations in each particular situation. We also show that the resulting amplitude equation has a Hamiltonian structure when the original boundary value problem has a variational origin. Our analysis encompasses previous equations derived for nonlinear Rayleigh waves in elasticity.     

Heterogeneous reactivity of chlorine atoms with ammonium sulfate and ammonium nitrate particles

In this laboratory study, model particles of ammonium sulfate (AS) and ammonium nitrate (AN) were exposed to chlorine atoms and uptake experiments were performed in a coated wall flow tube reactor coupled to a molecular beam mass spectrometer. The reactive surfaces were prepared by coating the inner surface of the reactor using two different methods: either by depositing size-selected particles on the halocarbon wax or by spray depositing thin films using a constant output atomizer. The observed uptake coefficients vary for (NH(4))(2)SO(4), ranging from γ(Cl)(AS)≈ 1 × 10(-3) for size-selected particles to γ(Cl)(AS)≈ 6 × 10(-2) for thin films prepared by spray. An uptake coefficient of γ(Cl)(AN)≈ 2.5 × 10(-3) of Cl˙ on size-selected NH(4)NO(3) particles was measured. A heterogeneous recombination of Cl atoms to from Cl(2) molecules was observed for the two surfaces. Furthermore, an ageing process was observed for AS particles, this phenomenon leading to the formation of new chlorine species on the solid substrate.     

Mapping of muscle deformation during heating: in situ dynamic MRI and nonlinear registration

We present developments in dynamic magnetic resonance imaging that allow internal structural muscle markers to be followed during heating. This monitoring is based on quantitative characterization of the experimental conditions and their temperature time course. A nonlinear image registration technique was optimized and applied to consecutively acquired images to measure the deformation fields in the muscle. A model coupling local deformation and temperature was obtained, which for the first time takes into account the variations of deformation and temperature in the sample. This modeling opens the way to a better understanding of the mechanisms responsible for mass loss and degradation of the textural properties of muscle during heating.     

Giant core-shell nanospherical clusters composed of 32 Co or 32 Ni atoms held by 6 p-tert-butylthiacalix[4]arene units

Using combinations of p-tert-butylthiacalix[4]arene (TCA) and [M(DMSO)(6)(BF(4))(2)] salts (M = Co(II) or Ni(II)), two almost isostructural core-shell-type thermally stable giant nanoclusters, composed of 32 metal centers, 6 deprotonated calix units binding the metal centers by both their O and S atoms, 24 μ-oxo or μ-hydroxo bridging groups, and 6 MeOH molecules, have been prepared under mild and reproducible conditions. For both giant clusters, the oxidation state II [M(II)(32)O(16)(OH)(8)(CH(3)OH)(6)TCA(6) (M = Co or Ni)] for the metal center was demonstrated by X-ray photoelectron and electronic absorption spectroscopies.