New fluorescent probes for carbonic anhydrases

We report the synthesis and fluorescence properties of naphthalenesulfonamide derivatives as active site probes for carbonic anhydrases.     

Structural elucidation of nitro-substituted five-membered aromatic heterocycles utilizing GIAO DFT calculations

The GIAO (Gauge Including Atomic Orbitals) DFT (Density Functional Theory) method is applied at the B3LYP/6-31+G(d,p)//B3LYP/6-31+G(d), B3LYP/6-311++G(d,p)//B3LYP/6-31+G(d), B3LYP/6-311+G (2d,p)//B3LYP/6-31+G(d) and B3LYP/6-311++G(d,p)//B3LYP/6-311++G(d,p) levels of theory for the calculation of proton and carbon chemicals shifts and coupling constants for 25 nitro-substituted five-membered heterocycles. Difference (1D NOE) spectra in combination with long-range gHMBC experiments were used as tools for the structural elucidation of nitro-substituted five-membered heterocycles. The assigned NMR data (chemical shifts and coupling constants) for all compounds were found to be in good agreement with theoretical calculations using the GIAO DFT method. The magnitudes of one-bond (1JCH) and long-range (nJCH, n>1) coupling constants were utilized for unambiguous differentiation between regioisomers of nitro-substituted five-membered heterocycles.     

Leveraging an enzyme/artificial substrate system to enhance cellular persulfides and mitigate neuroinflammation

Persulfides and polysulfides, collectively known as the sulfane sulfur pool along with hydrogen sulfide (H₂S), play a central role in cellular physiology and disease. Exogenously enhancing these species in cells is an emerging therapeutic paradigm for mitigating oxidative stress and inflammation that are associated with several diseases. In this study, we present a unique approach of using the cell''s own enzyme machinery coupled with an array of artificial substrates to enhance the cellular sulfane sulfur pool. We report the synthesis and validation of artificial/unnatural substrates specific for 3-mercaptopyruvate sulfurtransferase (3-MST), an important enzyme that contributes to sulfur trafficking in cells. We demonstrate that these artificial substrates generate persulfides in vitro as well as mediate sulfur transfer to low molecular weight thiols and to cysteine-containing proteins. A nearly 100-fold difference in the rates of H₂S production for the various substrates is observed supporting the tunability of persulfide generation by the 3-MST enzyme/artificial substrate system. Next, we show that the substrate 1a permeates cells and is selectively turned over by 3-MST to generate 3-MST-persulfide, which protects against reactive oxygen species-induced lethality. Lastly, in a mouse model, 1a is found to significantly mitigate neuroinflammation in the brain tissue. Together, the approach that we have developed allows for the on-demand generation of persulfides in vitro and in vivo using a range of shelf-stable, artificial substrates of 3-MST, while opening up possibilities of harnessing these molecules for therapeutic applications.

A persulfide/hydrogen sulfide generation strategy through artificial substrates for 3-mercaptopyruvate sulfurtransferase (3-MST) is reported, which enhances cellular persulfides, attenuates reactive oxygen species (ROS), and alleviates inflammation.     

Genetic individualization of <Emphasis Type="Italic">Cannabis sativa</Emphasis> by a short tandem repeat multiplex system

Cannabis sativa is the most frequently used of all illicit drugs in the USA. Cannabis has been used throughout history for its stems in the production of hemp fiber, seed for oil and food, and buds and leaves as a psychoactive drug. Short tandem repeats (STRs) were chosen as molecular markers owing to their distinct advantages over other genetic methods. STRs are codominant, can be standardized such that reproducibility between laboratories can be easily achieved, have a high discrimination power, and can be multiplexed. In this study, six STR markers previously described for C. sativa were multiplexed into one reaction. The multiplex reaction was able to individualize 98 cannabis samples (14 hemp and 84 marijuana, authenticated as originating from 33 of the 50 states of the USA) and detect 29 alleles averaging 4.8 alleles per loci. The data did not relate the samples from the same state to each other. This is the first study to report a single-reaction sixplex and apply it to the analysis of almost 100 cannabis samples of known geographic origin. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Flow-thermodynamics interactions in rapidly-sheared compressible turbulence

We investigate the behavior of flow variables, thermodynamic variables and their interaction in rapidly sheared (S) homogeneous compressible turbulence using rapid distortion theory (RDT). We subject an initially isotropic and incompressible flow field to homogeneous shear-rate of various strengths quantified by a gradient Mach number (M _g ) based on characteristic wavenumber. Our objective is to characterize the behavior of flow/thermodynamic fluctuations and their linear interactions during the course of turbulence evolution. Even though the mean shear-rate is held constant, the gradient Mach number progressively diminishes with time as the relevant wavenumber increases due to the mean deformation. The evolution exhibits three distinct phases which we categorize based on the character of pressure as: (i) Pressure-released (PR) stage which is observed when ${St < \sqrt{M_{g0}}}$ and pressure effects are negligible; (ii) Wave-character (WC) stage wherein ${\sqrt{M_{g0}} < St < M_{g0}}$ and the wave character of pressure is in evidence; and (iii) Low-Mach number (LM) stage when St > M _g0, where M _g0 is the initial gradient Mach number. In the PR regime we find that the thermodynamic fluctuations evolve from their initial state but velocity fluctuations grow unhindered by pressure fluctuations. In the WC regime, the pressure fluctuations become significant and flow-thermodynamic interaction commences. This interaction brings about equipartition of dilatational kinetic energy and thermodynamic potential energy. The interaction also results in stabilization of turbulence, and the total kinetic energy growth comes to a near standstill. Ultimately in the LM stage, kinetic energy starts increasing again with the growth rate being very similar to that in incompressible RDT. However, the thermodynamic fluctuations continue to grow despite the gradient Mach number being substantially smaller than unity. Overall, the study yields valuable insight into the linear processes in high Mach number shear flows and identifies important closure modeling issues.     

Molecular dynamics and structure-based virtual screening and identification of natural compounds as Wnt signaling modulators: possible therapeutics for Alzheimer’s disease

Molecular Diversity - Wnt signaling pathway is an evolutionarily conserved pathway responsible for neurogenesis, axon outgrowth, neuronal polarity, synapse formation, and maintenance....     

The Development of Bulky Palladium NHC Complexes for the Most-Challenging Cross-Coupling Reactions

Palladium‐catalyzed cross‐coupling reactions enable organic chemists to form C? C bonds in targeted positions and under mild conditions. Although phosphine ligands have been intensively researched, in the search for even better cross‐coupling catalysts attention has recently turned to the use of N‐heterocyclic carbene (NHC) ligands, which form a strong bond to the palladium center. PEPPSI (pyridine‐enhanced precatalyst preparation, stabilization, and initiation) palladium precatalysts with bulky NHC ligands have established themselves as successful alternatives to palladium phosphine complexes. This Review shows the success of these species in Suzuki–Miyaura, Negishi, and Stille–Migita cross‐couplings as well as in amination and sulfination reactions.