Detection of phosphoproteins on electroblot membranes using a small-molecule organic fluorophore

A new formulation of the small-molecule organic fluorophore, Pro-Q Diamond dye, has been developed that permits rapid and simple detection of phosphoproteins directly on polyvinylidene difluoride (PVDF) or nitrocellulose membranes (electroblots). Protein samples are first separated by electrophoresis and then electroblotted to membranes, stained and destained, in an analogous manner as typically performed with Amido Black or Ponceau S dye staining of total protein profiles. After staining, blots are imaged using any of a variety of laser-based gel scanners, xenon-arc lamp-based gel scanners or charge-coupled device (CCD) camera-based imaging devices equipped with UV trans- or epi-illumination. The uncomplicated and reliable staining protocol delivers results in as little as 1 h and the limit of detection for the stain is typically 2-4 ng of phosphoprotein with a linear dynamic range of approximately 15-fold. Compared with traditional radiolabeling and antibody-based approaches, the new method offers significant advantages, including avoidance of radioactivity, no need for expensive antibodies, no requirement for blocking unoccupied sites on the membrane with protein or detergent solutions, no sequence context-specific binding to phosphorylated amino acid residues and the ability to analyze the native, steady-state phosphorylation of proteins obtained directly from tissue specimens or body fluids. Pro-Q Diamond dye binds directly and exclusively to the phosphate moiety, allowing it to detect the broadest spectrum of phosphorylated proteins possible. The stain binds noncovalently to phosphoproteins and is thus fully compatible with matrix-assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF-MS) or Edman sequencing. The blot stain is also compatible with standard colorimetric, fluorogenic, and chemiluminescent detection techniques employed in immunoblotting.     

ISOMER COMPOSITION and SPECTRA OF THE DARK and LIGHT ADAPTED FORMS OF ARTIFICIAL BACTERIORHODOPSINS*

Abstract– The isomer composition and spectral properties of 15 artificial bacteriorhodopsin (bR) pigments, based on a series of retinal analogs with polyene residue modified below C₉ are determined for both dark-adapted (DA) and light-adapted (LA) forms. Similarly to native bR, in all cases only two isomers, C₁₃=C₁₄cis (13-cis) and M-trans, are observed. However, the artificial DA pigments have a lower 13-d.s content than native DA bR (? 66%) while the corresponding LA pigments have a much higher 13-cis content (11-69%) than native LA bR (<2%). Thus, in variance with the native pigment, in all of the artificial systems light also induced the reversed all-trans13-cis process. The data are accounted for in terms of specific steric interactions between the polyene and the protein binding site which allow a (C₁₅-anti)(C_ls-syn) isomerization during the photocycle of the artificial pigments, but not in the case of native bR. This accounts for the high proton pumping efficiency of the natural pigment. The nature of a highly red shifted light-adapted form of two of the artificial pigments is investigated and discussed. It is also shown that, in variance with native bR, several artificial pigments exhibit identical absorption spectra for their 13-cis and all-trans isomers. It is concluded that the spectral data for the above species of artificial pigments do not lead to a clear molecular model for the origin of the spectral shift between 13-cis and all-trans bR.     

Use of solid-phase extraction to enable enhanced detection of acyl homoserine lactones (AHLs) in environmental samples

A challenge for understanding the role of bacterial cell–cell signalling in the environment is the detection of those signals, which are often present in low (nmol L⁻¹) concentrations. We describe here a simple purification method, solid-phase extraction (SPE), for increasing the sensitivity of detection for one such group of signals, acyl homoserine lactones (AHLs), in environmental samples. Spiking of dried marine sponge tissue (Stylinos sp.) with AHLs resulted in detection down to 0.01 ppm for 3-oxo-hexanoyl homoserine lactone (3-oxo C₆-HSL) and 1 ppm for hexanoyl homoserine lactone (C₆-HSL). Compared with liquid extraction methods use of SPE resulted in twofold and tenfold improvements in sensitivity, respectively.     

Application of relaxed solutions to minimum sensitivity optimal control

Relaxed variational techniques are applied to a minimum sensitivity control problem. Sensitivity of a trajectory is minimized to perturbations in initial conditions. Rather than using the optimal control that does indeed exist and that satisfies the final conditions exactly, a suboptimal control is used that transfers the system from the given initial state to an arbitrary small neighborhood of the given final state, and that results in a considerably better performance than the optimal solution. The suboptimal control is constructed using the optimal controls of the relaxed problem.This paper is based upon the Ph.D. dissertation by the author at Purdue University, Lafayette, Indiana. The author wishes to thank Professor Violet B. Haas, School of Electrical Engineering, Purdue University, for introducing him to relaxed variational problems and for many very helpful suggestions through the course of this work.     

Structural response of different Lewis number premixed flames interacting with a toroidal vortex

Simultaneous measurements of temperature, CH* and OH* chemiluminescent species are carried out to explore the impact of stretch rate and curvature on the structure of premixed flames. The configuration of an initially flat premixed flame interacting with a toroidal vortex is selected for the present study and reasons for this choice are discussed. Lewis number effects are assessed by comparing methane and propane flames. It is emphasized that the flame structure experiences very strong variations. In particular, the flame is shrunk (broadened) in the initial (final) period of the interaction with the vortex where strain rate (curvature) contribution of the stretch rate is predominant. By further analysing independently the thickness of the preheat and reaction zones, it is shown that for propane flames, not only the former but also the latter is significantly altered in zones where the flame curvature is negative. Changes in the reaction zone properties are further emphasized using CH* and OH* radicals. It is demonstrated that higher thermal diffusivity plays a significant role around curved regions, in which the enhanced diffusion of heat leads to a strong increase of CH* compared to OH* intensity. As an overall conclusion, this study suggests that it would be interesting to reassess the internal flame structure at lower and moderate Karlovitz numbers since changes might appear for a moderate vortex intensity with typical size much larger than the flame thickness.     

Continue,quit, restart probability model

We discuss a new applied probability model: there is a system whose evolution is described by a Markov chain (MC) with known transition matrix on a discrete state space and at each moment of a discrete time a decision maker can apply one of three possible actions: continue, quit, and restart MC in one of a finite number of fixed “restarting” points. Such a model is a generalization of a model due to Katehakis and Veinott (Math. Oper. Res. 12:262, 1987), where a restart to a unique point was allowed without any fee and quit action was absent. Both models are related to Gittins index and to another index defined in a Whittle family of stopping retirement problems. We propose a transparent recursive finite algorithm to solve our model by performing O(n³) operations.     

Riccati equations and Lie series

Lie series and a special matrix notation for first-order differential operators are used to show that the Lie group properties of matrix Riccati equations arise in a natural way. The Lie series notation makes it evident that the solutions of a matrix Riccati equation are curves in a group of nonlinear transformations that is a generalization of the linear fractional transformations familiar from the classical complex analysis. It is easy to obtain a linear representation of the Lie algebra of the nonlinear group of transformations and then this linearization leads directly to the standard linearization of the matrix Riccati equations. We note that the matrix Riccati equations considered here are of the general rectangular type.     

Metal‐Doped Nitrogenated Carbon as an Efficient Catalyst for Direct CO2 Electroreduction to CO and Hydrocarbons

This study explores the kinetics, mechanism, and active sites of the CO₂ electroreduction reaction (CO2RR) to syngas and hydrocarbons on a class of functionalized solid carbon‐based catalysts. Commercial carbon blacks were functionalized with nitrogen and Fe and/or Mn ions using pyrolysis and acid leaching. The resulting solid powder catalysts were found to be active and highly CO selective electrocatalysts in the electroreduction of CO₂ to CO/H₂ mixtures outperforming a low‐area polycrystalline gold benchmark. Unspecific with respect to the nature of the metal, CO production is believed to occur on nitrogen functionalities in competition with hydrogen evolution. Evidence is provided that sufficiently strong interaction between CO and the metal enables the protonation of CO and the formation of hydrocarbons. Our results highlight a promising new class of low‐cost, abundant electrocatalysts for synthetic fuel production from CO₂.     

Hydroxidgruppen an Zeolithen. III. Eigenschaften von Hydroxidgruppen an ZnNaY-, CuNaY-, NiNaY- und CrNaY-Zeolithen

Hydroxide Groups on Zeolites. III. Properties of Hydroxide Groups on ZnNaY, CuNaY, NiNaY, and CrNaY Zeolites The properties of hydroxide groups in dependence on the degree of exchange were studied by IR spectroscopy of ZnNaY, CuNaY, NiNaY, and CrNaY zeolites. Five kinds of hydroxide groups occur on these zeolites: Hydroxid groups limiting the lattice, 3 kinds of structural hydroxide groups, and MeOH⁺ groups. These are the same kinds of hydroxide groups as exist on alkaline earths-Y-zeolites. Some of the OH groups act as acid Brönsted centers. The number of acid Brönsted centers reaches maximum values at degrees of exchange of 40–50% after a pretreatment at 300–400°C. The zeolitic structure is partially destroyed in ZnNaY, CuNaY, and especially CrNaY, at high degree of exchange.