O2 reduction to H2O by the multicopper oxidases

In nature the four electron reduction of O2 to H2O is carried out by Cytochrome c oxidase (CcO) and the multicopper oxidases (MCOs). In the former, Cytochrome c provides electrons for pumping protons to produce a gradient for ATP synthesis, while in the MCOs the function is the oxidation of substrates, either organic or metal ions. In the MCOs the reduction of O2 is carried out at a trinuclear Cu cluster (TNC). Oxygen intermediates have been trapped which exhibit unique spectroscopic features that reflect novel geometric and electronic structures. These intermediates have both intact and cleaved O-O bonds, allowing the reductive cleavage of the O-O bond to be studied in detail both experimentally and computationally. These studies show that the topology of the TNC provides a unique geometric and electronic structure particularly suited to carry out this key reaction in nature.     

Runaway events dominate the heavy tail of citation distributions

Statistical distributions with heavy tails are ubiquitous in natural and social phenomena. Since the entries in heavy tail have unproportional significance, the knowledge of its exact shape is very important. Citations of scientific papers form one of the best-known heavy tail distributions. Even in this case there is a considerable debate whether citation distribution follows the log-normal or power-law fit. The goal of our study is to solve this debate by measuring citation distribution for a very large and homogeneous data. We measured citation distribution for 418, 438 Physics papers published in 1980–1989 and cited by 2008. While the log-normal fit deviates too strong from the data, the discrete power-law function with the exponent γ = 3.15 does better and fits 99.955% of the data. However, the extreme tail of the distribution deviates upward even from the power-law fit and exhibits a dramatic “runaway” behavior. The onset of the runaway regime is revealed macroscopically as the paper garners 1000-1500 citations, however the microscopic measurements of autocorrelation in citation rates are able to predict this behavior in advance.     

Palladium(II)-catalyzed enantioselective synthesis of 2-vinyl oxygen heterocycles

2-Vinylchromanes (1), 2-vinyl-1,4-benzodioxanes (2), and 2,3-dihydro-2-vinyl-2H-1,4-benzoxazines (3) can be prepared in high yields (90-98%) and excellent enantiomeric purities (87-98% ee) by [COP-OAc](2)-catalyzed cyclization of phenolic (E)-allylic trichloroacetimidate precursors. Deuterium-labeling and computational experiments are consistent with these cyclization reactions taking place by an anti-oxypalladation/syn-deoxypalladation mechanism. 2-Vinylchromanes can also be prepared in good yields and high enantiomeric purities from analogous (E)-allylic acetate precursors, which constitutes the first report that acetate is a competent leaving group in COP-catalyzed enantioselective S(N)2' substitution reactions.     

Enhanced photocatalytic degradation of azo dyes using nano Fe3O4

Nanosized magnetic Fe₃O₄ synthesized via sonochemical route was used as a photocatalyst for the degradation of azo dyes, methyl red and congo red. The novelty of the photo catalyst is its easy recovery by magnetic force and its recycling ability due to its long-term stability, in addition to its cost effectiveness, non-toxicity and non-carcinogenicity. A detailed feasibility study has been carried out on the photocatalytic degradation of the azo dyes at various pH and at various concentrations of photocatalyst, dye and H₂O₂. The presence of photocatalyst is found to significantly accelerate the degradation of azo dyes and the optimal dosage is found to be 0.075 and 0.2?g/l for methyl red and congo red, respectively. Langmuir?CHinshelwood kinetic analysis revealed pseudo-first-order kinetics for the photocatalytic degradation of the dyes and the degradation products were identified using spectral analysis. The degradation study revealed the following order of reactivity: Photo-Fe₃O₄?>?Photo-H₂O₂?>?Fe₃O₄?>?H₂O₂.     

Structural and spectroscopic properties of the peroxodiferric intermediate of Ricinus communis soluble Δ9 desaturase

Large-scale quantum and molecular mechanical methods (QM/MM) and QM calculations were carried out on the soluble Δ(9) desaturase (Δ(9)D) to investigate various structural models of the spectroscopically defined peroxodiferric (P) intermediate. This allowed us to formulate a consistent mechanistic picture for the initial stages of the reaction mechanism of Δ(9)D, an important diferrous nonheme iron enzyme that cleaves the C-H bonds in alkane chains resulting in the highly specific insertion of double bonds. The methods (density functional theory (DFT), time-dependent DFT (TD-DFT), QM(DFT)/MM, and TD-DFT with electrostatic embedding) were benchmarked by demonstrating that the known spectroscopic effects and structural perturbation caused by substrate binding to diferrous Δ(9)D can be qualitatively reproduced. We show that structural models whose spectroscopic (absorption, circular dichroism (CD), vibrational and M?ssbauer) characteristics correlate best with experimental data for the P intermediate correspond to the μ-1,2-O(2)(2-) binding mode. Coordination of Glu196 to one of the iron centers (Fe(B)) is demonstrated to be flexible, with the monodentate binding providing better agreement with spectroscopic data, and the bidentate structure being slightly favored energetically (1-10 kJ mol(-1)). Further possible structures, containing an additional proton or water molecule are also evaluated in connection with the possible activation of the P intermediate. Specifically, we suggest that protonation of the peroxide moiety, possibly preceded by water binding in the Fe(A) coordination sphere, could be responsible for the conversion of the P intermediate in Δ(9)D into a form capable of hydrogen abstraction. Finally, results are compared with recent findings on the related ribonucleotide reductase and toluene/methane monooxygenase enzymes.     

How to measure chi(3) of a nanoparticle

Most of the known methods to measure the nonlinear optical properties of materials deal with the bulk properties, but there are many demanding applications that require those measurements to be done on a single particle or a single molecule. We report a novel application of nonlinear optics to measure the third-order nonlinear optical susceptibility of nanoparticles in solutions. By measuring the power of the third harmonic generated in a diluted solution of nanoparticles, both the size and chi(3) can be extracted from a simple set of measurements.     

Redox-driven conductance switching via filament formation and dissolution in carbon/molecule/TiO2/Ag molecular electronic junctions

Carbon/molecule/TiO2/Au molecular electronic junctions show robust conductance switching, in which a metastable high conductance state may be induced by a voltage pulse which results in redox reactions in the molecular and TiO2 layers. When Ag is substituted for Au as the "top contact", dramatically different current/voltage curves and switching behavior result. When the carbon substrate is biased negative, an apparent breakdown occurs, leading to a high conductance state which is stable for at least several hours. Upon scanning to positive bias, the conductance returns to a low state, and the cycle may be repeated hundreds of times. Similar effects are observed when Cu is substituted for Au and for three different molecular layers as well as "control" junctions of the type carbon/TiO2/Ag/Au. The polarity of the "switching" is reversed when the Ag layer is between the carbon and molecular layers, and the conductance change is suppressed at low temperature. Pulse experiments show very erratic transitions between high and low conductivity states, particularly near the switching threshold. The results are consistent with a switching mechanism based on Ag or Cu oxidation, transport of their ions through the TiO2, and reduction at the carbon to form a metal filament.     

X-ray absorption edge spectroscopy and computational studies on LCuO2 species: Superoxide-Cu(II) versus peroxide-Cu(III) bonding

The geometric and electronic structures of two mononuclear CuO2 complexes, [Cu(O2){HB(3-Ad-5-(i)Prpz)3}] (1) and [Cu(O2)(beta-diketiminate)] (2), have been evaluated using Cu K- and L-edge X-ray absorption spectroscopy (XAS) studies in combination with valence bond configuration interaction (VBCI) simulations and spin-unrestricted broken symmetry density functional theory (DFT) calculations. Cu K- and L-edge XAS data indicate the Cu(II) and Cu(III) nature of 1 and 2, respectively. The total integrated intensity under the L-edges shows that the 's in 1 and 2 contain 20% and 28% Cu character, respectively, indicative of very covalent ground states in both complexes, although more so in 1. Two-state VBCI simulations also indicate that the ground state in 2 has more Cu (/3d8) character. DFT calculations show that the in both complexes is dominated by O2(n-) character, although the O2(n-) character is higher in 1. It is shown that the ligand L plays an important role in modulating Cu-O2 bonding in these LCuO2 systems and tunes the ground states of 1 and 2 to have dominant Cu(II)-superoxide-like and Cu(III)-peroxide-like character, respectively. The contributions of ligand field (LF) and the charge on the absorbing atom in the molecule (Q(mol)M) to L- and K-edge energy shifts are evaluated using DFT and time-dependent DFT calculations. It is found that LF makes a dominant contribution to the edge energy shift, while the effect of Q(mol)M is minor. The charge on the Cu in the Cu(III) complex is found to be similar to that in Cu(II) complexes, which indicates a much stronger interaction with the ligand, leading to extensive charge transfer.     

Copper-dioxygen adducts and the side-on peroxo dicopper(II)/bis(mu-oxo) dicopper(III) equilibrium: Significant ligand electronic effects

The variation of ligand para substituents on pyridyl donor groups of tridentate amine copper(I) complexes was carried out in order to probe electronic effects on the equilibrium between mu-eta2:eta2-(side-on)-peroxo [Cu(II)2(O2(2-))]2+ and bis(mu-oxo) [Cu(III)2(O(2-))2] species formed upon reaction with O2. [Cu(I)(R-PYAN)(MeCN)n]B(C6F5)4 (R-PYAN = N-[2-(4-R-pyridin-2-yl)-ethyl]-N,N',N'-trimethyl-propane-1,3-diamine, R = NMe2, OMe, H, and Cl) (1R) vary over a narrow range in their Cu(II)/Cu(I) redox potentials (E(1/2) vs Fe(cp)2(+/0) = -0.40 V for 1(NMe2), -0.38 V for 1(OMe), -0.33 V for 1H, and -0.32 V for 1Cl) and in C-O stretching frequencies of their carbonyl adducts, 1R-CO: nu(C-O) = 2080, 2086, 2088, and 2090 cm(-1) for R = NMe2, OMe, H, and Cl, respectively. However, within this range of electronic properties for 1R, dioxygen reactivity is significantly affected. The reaction of 1Cl or 1H with O2 at -78 degrees C in CH2Cl2 gives UV-vis and resonance Raman spectra indicative of a mu-eta2:eta2-(side-on)-peroxo dicopper(II) adduct (2R). Compound 1(OMe) reacts with O2, yielding equilibrium mixtures of side-on peroxo (2(OMe)) and bis(mu-oxo) (3(OMe)) species. Oxygenation of 1(NMe2) leads to the sole generation of the bis(mu-oxo) dicopper(III) complex (3(NMe2)). A solvent effect was also observed; in acetone or THF, increased ratios of bis(mu-oxo) relative to side-on peroxo complex are observed. Thus, the equilibrium between a dicopper side-on peroxo and bis(mu-oxo) species can be tuned by ligand design-specifically, more electron donating ligands favor the formation of the latter isomer, and the peroxo/bis(mu-oxo) equilibrium can be shifted from one extreme to the other within the same ligand system. Observations concerning the reactivity of the dioxygen adducts 2H and 3(NMe2) toward external substrates are also presented.