Measurement of frictional interactions at soil-tool interfaces

A diaphragm transducer has been developed for measuring local soil-tool interactions with essentially no normal deflection of the diaphragm. For tool motion within a pre-formed channel in soil, the normal contact pressure was found to be very nearly constant, while the tangential friction force followed a transient behaviour toward a steady-state value. Steady-state friction coefficients ranged from 0.06 to 0.25, smaller values being associated with faster velocities and shorter stroke length.     

Overcoming computational uncertainties to reveal chemical sensitivity in single molecule conduction calculations

In the calculation of conduction through single molecule's approximations about the geometry and electronic structure of the system are usually made in order to simplify the problem. Previously [G. C. Solomon, J. R. Reimers, and N. S. Hush, J. Chem. Phys. 121, 6615 (2004)], we have shown that, in calculations employing cluster models for the electrodes, proper treatment of the open-shell nature of the clusters is the most important computational feature required to make the results sensitive to variations in the structural and chemical features of the system. Here, we expand this and establish a general hierarchy of requirements involving treatment of geometrical approximations. These approximations are categorized into two classes: those associated with finite-dimensional methods for representing the semi-infinite electrodes, and those associated with the chemisorption topology. We show that ca. 100 unique atoms are required in order to properly characterize each electrode: using fewer atoms leads to nonsystematic variations in conductivity that can overwhelm the subtler changes. The choice of binding site is shown to be the next most important feature, while some effects that are difficult to control experimentally concerning the orientations at each binding site are actually shown to be insignificant. Verification of this result provides a general test for the precision of computational procedures for molecular conductivity. Predictions concerning the dependence of conduction on substituent and other effects on the central molecule are found to be meaningful only when they exceed the uncertainties of the effects associated with binding-site variation.     

Axial ligation of Fe(II)-bleomycin probed by XANES spectroscopy

Full multiple scattering calculations of the Fe K-edge X-ray absorption near edge structure of bleomycin have been performed. Structural insight is based on the comparison between experimental and theoretical data calculated for different active site models coming from NMR-informed molecular dynamic simulations. In all models considered, the equatorial ligands (secondary amine in beta-aminoalanine, pyrimidine and imidazole rings and the beta-hydroxyhistidine) were left unchanged. Seven models with two axial ligands (the primary amine in beta-aminoalanine and the carbomoyl group of the mannose or a solvent molecule) were tested. The best agreement between theoretical and experimental spectra is achieved for the model of bleomycin with the primary amine and the oxygen of the mannose sugar occupying the axial positions. The coordination environment is characterized by serious distortions of the Fe octahedron, including the presence of one ligand with a very short bond length and significant angular distortions.     

Molecular modeling studies of polymeric gas separation and barrier materials: structure and transport mechanisms

Molecular modeling studies have been completed on cis-PTBA(poly(tert-butylacetylene)) and Sixef44 polyimide, two glassy polymers that can be used to form gas separation membranes. The modeling studies show that polymer backbone bond rotations in PTBA are not thermally allowed. This leads to a helical structure for the cis-PTBA chains which pack as if the helices were rigid rods. Here, polymer free volume is formed by the interstitial space between adjacent helices, and gas transport occurs via continuous diffusion through the resulting channel-like free volume. On the other hand, Sixef44 exhibits a flexible polymer backbone, which leads to the formation of irregular voids. In this case, gas molecules are free to move within the voids, but transport occurs only by hopping to an adjacent void, or by void diffusion. In either case, gas transport is closely coupled to polymer backbone motion. Thus, these studies suggest two different types of free volume and gas transport mechanisms. The diffusion mechanism in glassy polymer membranes will depend on the nature of the free volume (e.g. the type of chain packing), and the polymer backbone chain flexibility.     

Polymerization of asymmetric polyfunctional monomers. III. Ionic polymerization of acrylic and methacrylic esters of 2-allylphenol

The polymerization of acrylic and methacrylic esters of 2-allyphenol with different anionic, cationic and coordination catalysts was studied. The polymerization occurs exclusively or predominantly through (meth)acrylic C?C double bonds in all the studied cases. With anionic catalysts the allylic groups are not polymerizable and the polymers have linear structure. Polymerization with catalysts based on dialkylaluminum chloride (alone or associated with some metal salts) yields soluble or partially crosslinked polymers, depending on the reaction conditions. The crosslinking is due to the participation of allylic groups in the polymerization reactions. Copolymers of acrylic and methacrylic esters of 2-allylphenol with styrene, acrylonitrile, methyl methacrylate, N-vinylcarbazole and 1,3-pentadiene were synthesized by copolymerization in the presence of anionic catalysts and of systems based on dialkylaluminum chloride.     

A stabilized mu-eta(2):eta(2) peroxodicopper(II) complex with a secondary diamine ligand and its tyrosinase-like reactivity

The activation of dioxygen (O(2)) by Cu(I) complexes is an ubiquitous process in biology and industrial applications. In tyrosinase, a binuclear copper enzyme, a mu-eta(2):eta(2)-peroxodicopper(II) species is generally accepted to be the active oxidant. Reported here is the characterization and reactivity of a stable mu-eta(2):eta(2)-peroxodicopper(II) complex at -80 degrees C using a secondary diamine ligand, N,N'-di-tert-butyl-ethylenediamine (DBED). The spectroscopic characteristics of this complex (UV-vis, resonance Raman) prove to be strongly dependent on the counteranion employed and not on the solvent, suggesting an intimate interaction of the counteranions with the Cu-O(2) cores. This interaction is also supported by solution EXAFS data. This new complex exhibits hydroxylation reactivity by converting phenolates to catechols, proving to be a functional model of tyrosinase. Additional interest in this Cu/O(2) species results from the use of Cu(I)-DBED as a polymerization catalyst of phenols to polyphenylene oxide (PPO) with O(2) as the terminal oxidant.     

Distal metal effects in cobalt porphyrins related to CcO

Cobalt(II) porphyrins were studied to determine the influence of distal site metalation and superstructure upon dioxygen reactivity in active site models of cytochrome c oxidase (CcO). Monometallic, Co(II)(P) complexes when ligated by an axial imidazole react with dioxygen to form reversible Co-superoxide adducts, which were characterized by EPR and resonance Raman (RR). Unexpectedly, certain Co porphyrins with Cu(I) metalated imidazole pickets do not form mu-peroxo Co(III)/Cu(II) products even though the calculated intermetallic distance suggests this is possible. Instead, cobalt-porphyrin-superoxide complexes are obtained with the distal copper remaining as Cu(I). Moreover, distal metals (Cu(I) or Zn(II)) greatly enhance the stability of the dioxygen adduct, such that Co superoxides of bimetallic complexes demonstrate minimal reversibility. The "trapping" of dioxygen by a second metal is attributed to structural and electrostatic changes within the distal pocket upon metalation. EPR evidence suggests that the terminal oxygen in these bimetallic Co-superoxide systems is H-bonded to the NH of an imidazole picket amide linker, which may contribute to enthalpic stabilization of the dioxygen adduct. Stabilization of the dioxygen adduct in these bimetallic systems suggests one possible role for the distal copper in the Fe/Cu bimetallic active site of terminal oxidases, which form a heme-superoxide/copper(I) adduct upon oxygenation.