Oxygen reactivity of the biferrous site in the de novo designed four helix bundle peptide DFsc: nature of the "intermediate" and reaction mechanism

The DFsc and DFscE11D de novo designed protein scaffolds support biomimetic diiron cofactor sites that react with dioxygen forming a 520 nm "intermediate" species with an apparent pseudo-first-order formation rate constant of 2.2 and 4.8 s-1, respectively. Resonance Raman spectroscopy shows that this absorption feature is due to a phenolate-to-ferric charge transfer transition arising from a single tyrosine residue coordinating terminally to one of the ferric ions in the site. Phenol coordination could provide a proton to promote rapid loss of a putative peroxo species.     

Protonation state of the Cu4S2 CuZ site in nitrous oxide reductase: redox dependence and insight into reactivity

Spectroscopic and computational methods have been used to determine the protonation state of the edge sulfur ligand in the Cu₄S₂ Cu_Z form of the active site of nitrous oxide reductase (N₂OR) in its 3Cu^ICu^II (1-hole) and 2Cu^I2Cu^II (2-hole) redox states. The EPR, absorption, and MCD spectra of 1-hole Cu_Z indicate that the unpaired spin in this site is evenly delocalized over Cu_I, Cu_II, and Cu_IV. 1-hole Cu_Z is shown to have a μ₂-thiolate edge ligand from the observation of S–H bending modes in the resonance Raman spectrum at 450 and 492 cm^–1 that have significant deuterium isotope shifts (–137 cm^–1) and are not perturbed up to pH 10. 2-hole Cu_Z is characterized with absorption and resonance Raman spectroscopies as having two Cu–S stretching vibrations that profile differently. DFT models of the 1-hole and 2-hole Cu_Z sites are correlated to these spectroscopic features to determine that 2-hole Cu_Z has a μ₂-sulfide edge ligand at neutral pH. The slow two electron (+1 proton) reduction of N₂O by 1-hole Cu_Z is discussed and the possibility of a reaction between 2-hole Cu_Z and O₂ is considered.     

Vilsmeier–Haack formylation of coumarin derivatives. A solvent dependent kinetic study

A kinetic study of the reaction of coumarin derivatives with Vilsmeier-Haack (VH) reagent (1:1 DMF-POCl₃) in various solvent media revealed second-order kinetics with a first-order in [Substrate] and first-order in [VH reagent]. The reaction rates altered nonlinearly with an increase in the dielectric constant of the medium and the data did not fit completely well with either Amis or Kirkwood's theories of ion (SINGLEBOND) dipole and dipole (SINGLEBOND) dipole type reactions. On the basis of kinetic and spectroscopic results, participation of VH-adduct and coumarin molecule in the rate limiting step, has been proposed. Kinetic and activation parameters have been evaluated and discussed in terms of isokinetic relationship and as a function of solvent compositions. Linearity of Leffler's and Exner's plots indicate a similar type of mechanism to be operative in different dielectric media at all temperatures. © 1996 John Wiley & Sons, Inc.     

Genesis of the CSIRO polymer group and the discovery and significance of nitroxide‐mediated living radical polymerization

The background to the formation of the Commonwealth Scientific and Industrial Research Organization (CSIRO) polymer group is discussed. In particular, the challenges of working with high‐conversion polymerization, as found in commercial systems, and the need to explain variations in polymer properties led to important advances in the theory of radical polymerization and control over both the initiation and termination steps. Studies on the fate of the macromonomer, formed in termination by disproportionation, led to an early form of addition/fragmentation now known as reversible addition–fragmentation chain transfer, whereas detailed studies on initiation pathways using nitroxide trapping led to nitroxide‐mediated living radical polymerization. These studies contributed to the renaissance in free‐radical polymerization studies. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 43: 5748–5764, 2005     

Electronic structure of high-spin iron(III)-alkylperoxo complexes and its relation to low-spin analogues: reaction coordinate of O-O bond homolysis.

The spectroscopic properties of the high-spin Fe(III)-alkylperoxo model complex [Fe(6-Me(3)TPA)(OH(x))(OO(t)Bu)](x)(+) (1; TPA = tris(2-pyridylmethyl)amine, (t)Bu = tert-butyl, x = 1 or 2) are defined and related to density functional calculations of corresponding models in order to determine the electronic structure and reactivity of this system. The Raman spectra of 1 show four peaks at 876, 842, 637, and 469 cm(-1) that are assigned with the help of normal coordinate analysis, and corresponding force constants have been determined to be 3.55 mdyn/A for the O-O and 2.87 mdyn/A for the Fe-O bond. Complex 1 has a broad absorption feature around 560 nm that is assigned to a charge-transfer (CT) transition from the alkylperoxo to a t(2g) d orbital of Fe(III) with the help of resonance Raman profiles and MCD spectroscopy. An additional contribution to the Fe-O bond arises from a sigma interaction between and an e(g) d orbital of iron. The electronic structure of 1 is compared to the related low-spin model complex [Fe(TPA)(OH(x))(OO(t)Bu)](x)(+) and the reaction coordinate for O-O homolysis is explored for both the low-spin and the high-spin Fe(III)-alkylperoxo systems. Importantly, there is a barrier for homolytic cleavage of the O-O bond on the high-spin potential energy surface that is not present for the low-spin complex, which is therefore nicely set up for O-O homolysis. This is reflected by the electronic structure of the low-spin complex having a strong Fe-O and a weak O-O bond due to a strong Fe-O sigma interaction. In addition, the reaction coordinate of the Fe-O homolysis has been investigated, which is a possible decay pathway for the high-spin system, but which is thermodynamically unfavorable for the low-spin complex.     

Chemistry of novolac resins. II. Reaction of model phenols with hexamethylenetetramine

It is proposed that the reactions of hexamethylenetetramine (HMTA) with 2,4-xylenol and with 2,6-xylenol occur by different pathways. The rate of reaction and the final product distribution depend on the initial xylenol : HMTA ratio and are different in the two systems. Measured by HMTA consumption, with 2,4-xylenol the reaction rate increased with increasing xylenol : HMTA ratios, whereas with 2,6-xylenol the rate of reaction decreased with increasing 2,6-xylenol : HMTA ratio. In systems which contain both 2,4- and 2,6-xylenol, a strong preference for reaction of the HMTA with the ortho site of 2,4-xylenol was noted. This preference was apparent even in mixtures in which 2,6-xylenol was present in greater amounts than 2,4-xylenol. © 1997 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 35: 1389–1398, 1997     

The reaction of furfuryl alcohol resins with hexamethylenetetramine: A 13C and 15N high-resolution solid-state NMR study

The reactions between furfuryl alcohol (FA)/poly(furfuryl alcohol) (PFA) and hexamethylenetetramine (HMTA) have been studied by ¹³C and ¹⁵N high-resolution solid-state NMR techniques. Highly crosslinked polymer networks similar to those obtained from the thermal curing of FA resins under acidic condition are formed. Possible reaction pathways are postulated on the basis of changes of chemical structures during the curing; α-substituted furfurylamines are shown to be the initial intermediates. Their further reactions with FA/PFA, together with thermal decomposition, produce methylene linkages between furan rings, resulting in chain extension and crosslinking, which occurs at both the methylene linkages and the 3- or 4-C of furan rings. Various side-products such as amines, imines, amides, imides, and nitriles are also formed during the reactions, and some of these can remain in the resins up to 205°C. The crosslinked network can be heterogeneous with different structures on nanometer scales when higher oligomers of FA resins react with HMTA. © 1997 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 35 : 2233–2243, 1997     

Total Synthesis of Vancomycin Aglycon—Part 2: Synthesis of Amino Acids 1–3 and Construction of the AB-COD-DOE Ring Skeleton

A triazene-based synthetic strategy for the construction of the complex biaryl ethers and a Suzuki coupling reaction were the key steps in the synthesis of precursor 1 of the aglycon of vancomycin, which already contains the complete skeleton of the target compound. The cleavage of the triazene unit from the D ring and the removal of the other protecting groups led to the aglycon of vancomycin. These strategies should be particularly valuable for the synthesis of other naturally occurring glycopeptide antibiotics and offer opportunities for the synthesis of combinatorial libraries of compounds of the vancomycin family for chemical biology studies.     

Characterization of an orphan Ra–Be neutron source

Journal of Radioanalytical and Nuclear Chemistry - An orphan radium-beryllium (Ra–Be) neutron source (Nuclear Chicago Corporation) detected inside a scrap metal shipping container, was seized...