Note on the boundary layer on a rotating

Ohne Zusammenfassung

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Miscellaneous

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Divers

     

Conformational Dynamics Underlies Different Functions of Human KDM7 Histone Demethylases

The human KDM7 subfamily histone H3 Nϵ-methyl lysine demethylases PHF8 (KDM7B) and KIAA1718 (KDM7A) have different substrate selectivities and are linked to genetic diseases and cancer. We describe experimentally based computational studies revealing that flexibility of the region linking the PHD finger and JmjC domains in PHF8 and KIAA1718 regulates interdomain interactions, the nature of correlated motions, and ultimately H3 binding and demethylation site selectivity. F279S an X-linked mental retardation mutation in PHF8 is involved in correlated motions with the iron ligands and second sphere residues. The calculations reveal key roles of a flexible protein environment in productive formation of enzyme-substrate complexes and suggest targeting the flexible KDM7 linker region is of interest from a medicinal chemistry perspective.     

Visible regime application of zone plate coded incoherent holography

Unlike conventional optical holography which requires coherent radiation, zone plate coded holography (ZPCH) offers the possibility of encoding 3D information of an incoherent radiation source. But ZPCH with its coherent optical reconstruction (COR) is unsuitable to be used in the visible regime. However, proposed digital ZPCH scheme for visible regime uses digital decoding instead of COR and overcomes this limitation. This paper discusses the issues of visible regime ZPCH and presents experimental results of applying the modified scheme to encode and successfully decode a visible source, for the first time, to our knowledge. In addition to imaging of incoherent radiation sources, visible regime incoherent holography may find use in constructing holograms of live cells or objects, like retina, where coherent illumination can be detrimental.     

Beyond generative models: superfast traversal,optimization, novelty,exploration and discovery (STONED) algorithm for molecules using SELFIES

Inverse design allows the generation of molecules with desirable physical quantities using property optimization. Deep generative models have recently been applied to tackle inverse design, as they possess the ability to optimize molecular properties directly through structure modification using gradients. While the ability to carry out direct property optimizations is promising, the use of generative deep learning models to solve practical problems requires large amounts of data and is very time-consuming. In this work, we propose STONED – a simple and efficient algorithm to perform interpolation and exploration in the chemical space, comparable to deep generative models. STONED bypasses the need for large amounts of data and training times by using string modifications in the SELFIES molecular representation. First, we achieve non-trivial performance on typical benchmarks for generative models without any training. Additionally, we demonstrate applications in high-throughput virtual screening for the design of drugs, photovoltaics, and the construction of chemical paths, allowing for both property and structure-based interpolation in the chemical space. Overall, we anticipate our results to be a stepping stone for developing more sophisticated inverse design models and benchmarking tools, ultimately helping generative models achieve wider adoption.

Interpolation and exploration within the chemical space for inverse design.     

A CAN-induced cyclodimerization-Ritter trapping strategy for the one-pot synthesis of 1-amino-4-aryltetralins from styrenes

[reaction: see text]. A facile one-pot synthesis of 1-amino-4-aryl-tetralin derivatives by the CAN-induced cyclodimerization of various styrenes in acetonitrile and acrylonitrile is described.     

An enaminone-directed benzannulation/macrocyclization approach to cyclophane ring systems

A straightforward and modular preparative approach to 1,3,5-triaroylbenzene-based functionalized cyclophane ring systems has been developed. The key cyclophane-forming macrocyclization reaction was accomplished during the course of a regioselective cross-benzannulation between bis(aryl ethynyl) ketone and enaminone reactants. Macrocyclic products with ring sizes ranging from 18- to 22-membered were successfully constructed. The composition of the tether connecting the two aryl ethynyl ketone fragments can be easily varied; consequently, this method is suitable for construction of a diverse range of structurally distinct cyclophane products. To illustrate this feature, cyclophanes possessing xylyl, alkyl, di(ethylene triamine), and di(ethylene oxy) bridging units were synthesized in isolated yields of 11-46%. Three new cyclophanes (calixarene-like macrocyles 8 and 9, as well as crownophane 18) were structurally characterized by X-ray diffractometry.     

Antitumor metallothiosemicarbazonates: structure and antitumor activity of palladium complex of phenanthrenequinone thiosemicarbazone

The crystal structure of the potential antitumor metal compound, viz. chloro, mono(phenanthrenequinone thiosemicarbazonato) palladium(II) dimethyl formamide solvate, is reported. The central palladium(II) atom is in a square planar environment provided by the tridentate, monoanionic thiosemicarbazone ligand and the ancillary chloride ion. The compound exhibited remarkable activity against drug-sensitive and drug-resistant breast cancer cell lines and was relatively nontoxic toward the normal mammary epithelial cells. The drug-induced killing effect against breast cancer cell lines was predominantly mediated via apoptosis, a physiologic form of cell death.     

Synthesis and Characterization of nido-[1,1,2,2-(CO)(4)-1,2-(PPh(3))(2)-1,2-FeIrB(2)H(5)]: A Heterobimetallaborane Analogue of nido-[B(4)H(7)](-)

The synthesis and characterization of nido-[1,1,2,2-(CO)(4)-1,2-(PPh(3))(2)-1,2-FeIrB(2)H(5)] (1) is reported. 1 is formed in low yield as a degradation product from the reaction between [{&mgr;-Fe(CO)(4)}B(6)H(9)](-) and trans-Ir(CO)Cl(PPh(3))(2) in THF and is characterized from NMR, IR, and analytical data and by a single-crystal X-ray diffraction study. 1 crystallizes in the monoclinic space group P2(1)/n with a = 12.8622(12), b = 14.3313(12), c = 23.579(3) ?, beta = 97.12(2) degrees, Z = 4, V = 4257.0(8) ?(3), R(1) = 4.83%, and wR(2)()(F(2)) = 12.43%. The heterobimetallaborane structure may be viewed as a derivative of the binary boron hydride nido-[B(4)H(7)](-) and is related to the known homobimetallatetraborane analogues [Fe(2)(CO)(6)B(2)H(6)] and [Co(2)(CO)(6)B(2)H(4)]. 1 exhibits proton fluxionality in its (1)H NMR spectrum, which is related to that found in the latter two compounds.     

The nido–osmaboranes [2,2,2-(CO)(PPh3)2-nido-2-OsB5H9] and [6,6,6-(CO)(PPh3)2-nido-6-OsB9H13]

The structural characterization of the osmahexaborane 2-carbonyl-2,2-bis­(tri­phenyl­phosphine)-nido-2-osmahexaborane(9), [Os(B₅H₉)(C₁₈H₁₅P)₂(CO)], (I), a metallaborane analogue of B₆H₁₀, confirms the structure proposed from NMR spectroscopy. The structure of the osmadecaborane 6-carbonyl-6,6-bis­(tri­phenyl­phosphine)-nido-6-osmadecaborane(13), [Os(B₉H₁₃)(C₁₈H₁₅P)₂(CO)], (IV), is similarly confirmed. The short basal B—B distance of 1.652 (8) Å in (I), not bridged by an H atom, mirrors that in the parent hexaborane(10) [1.626 (4) Å].