Bigger data,collaborative tools and the future of predictive drug discovery

Over the past decade we have seen a growth in the provision of chemistry data and cheminformatics tools as either free websites or software as a service commercial offerings. These have transformed how we find molecule-related data and use such tools in our research. There have also been efforts to improve collaboration between researchers either openly or through secure transactions using commercial tools. A major challenge in the future will be how such databases and software approaches handle larger amounts of data as it accumulates from high throughput screening and enables the user to draw insights, enable predictions and move projects forward. We now discuss how information from some drug discovery datasets can be made more accessible and how privacy of data should not overwhelm the desire to share it at an appropriate time with collaborators. We also discuss additional software tools that could be made available and provide our thoughts on the future of predictive drug discovery in this age of big data. We use some examples from our own research on neglected diseases, collaborations, mobile apps and algorithm development to illustrate these ideas.     

A variant of Shelah's characterization of Strong Chang's Conjecture

Shelah considered a certain version of Strong Chang's Conjecture which we denote , and proved that it is equivalent to several statements, including the assertion that Namba forcing is semiproper. We introduce an apparently weaker version, denoted , and prove an analogous characterization of it. In particular, is equivalent to the assertion that the the Friedman‐Krueger poset is semiproper. This strengthens and sharpens results by Cox and sheds some light on problems posed by Usuba, Torres‐Perez and Wu.     

Condensed Mode Cooling of Ethylene Polymerization in Fluidized Bed Reactors

This review gives an overview of the evolution of the technology of condensed mode cooling, primarily for the case of ethylene polymerization on supported catalysts in fluidized bed reactors. It is well known that this mode of heat removal is quite effective in allowing polyolefin manufacturers to increase significantly production rates. What is perhaps less well understood are all of the issues that, in addition to the effect of the latent heat of vaporization of injected liquid components, also have an impact on the rate of production and behavior of the reactor. However, the liquid components injected into the reactor can vaporize rapidly under full‐scale conditions, leaving behind several heavy components (with respect to ethylene) that have numerous effects on how the particles behave, on the reaction rate, and on fluidization, fouling, and other parameters related to reactor and process performance.     

Development of a prototype high-current low-energy ion implanter

A high current-low energy implant system for the processing of semiconductor devices at medium-high dopant levels is described. Criteria for selection and design of ion beam components such as ion beam optics, vacuum requirements and reliability are discussed. Variations in wafer uniformities for within wafer, wafer-to-wafer and run-to-run are presented.     

Using monomer properties to obtain integrated intensities for vibrational transitions of van der Waals complexes

The integrated intensities of vibrational transitions depend on the magnitude of the derivatives of the dipole with respect to nuclear motion. Normally, the only reliable way to compute such derivatives is by tedious and expensive ab initio calculations. In this paper, we present a simplification for weakly bound complexes based on distributed schemes for describing the charge densities and polarizabilities of the monomers. Formulations based on both Cartesian and spherical harmonics are presented. The results for both these schemes agree exactly with each other, and qualitatively with full ab initio calculations for the hydrogen fluoride dimer, (HF)₂.     

Facile one-pot synthesis of tetrahydroisoquinolines from amino acids via hypochlorite-mediated decarboxylation and Pictet–Spengler condensation

A convenient method for oxidative decarboxylation of α-amino acids is presented. The aldehyde products may be isolated or converted to tetrahydroisoquinolines by addition of dopamine via Pictet–Spengler reaction. Racemic products are generated by phosphate buffer >300 mM to maximize regioselectivity. (S)-Enantiomer products are generated by norcoclaurine synthase reaction in maleic acid buffer to minimize chemical background reaction.