Effect of Alkynyl Group on Reactivity in Photoaffinity Labeling with 2-Thienyl-Substituted α-Ketoamide

Minimalist photo-reactive probes, which consist of a photo-reactive group and a tag for detection of target proteins, are useful tools in chemical biology. Although several diazirine-based and aryl azide-based minimalist probes are available, no keto-based minimalist probe has yet been reported. Here we describe minimalist probes based on a 2-thienyl-substituted α-ketoamide bearing an alkyne group on the thiophene ring. The 3-alkyne probe showed the highest photo-affinity labeling efficiency.     

o-Diketonedioxime compounds as analytical reagents for the spectrophotometric determination of nickel

Sixteen dioxime compounds, including six new compounds, were synthesized and their reactions with nickel, cobalt, iron(II, III) and copper ions were examined. The nickel chelates of the glyoxime derivatives show hardly any absorption in the visible region, and are therefore unsuitable as color reagents. The nickel chelates of the benzildioxime derivatives can be extracted into organic solvents and provide a selective color reaction, so that useful extraction-spectrophotometric methods are possible. The metal complexes of quinonedioximes are extracted into some organic solvents, and the complexes have relatively large molar absorptivities in the visible region, but the reagents are not selective. However, the molar absorptivity of the ternary complex, Ni²⁺-reagent-zephiramine, with 1,2-naphthoquinonedioxime-4-sulfonic acid was 2.03·10⁴ at 480 nm, and that of the nickel complex of 9,10-phenanthrenequinonedioxime was 2.49·10⁴at 456 nm. The compositions of the nickel-dioxime complexes were examined spectrophotometrically.     

Amino acid residues in GRK1/GRK7 responsible for interaction with S-modulin/recoverin

GRK1 is a visual pigment kinase in rods and is essential for inactivation of light-activated rhodopsin. The GRK1 activity is inhibited by binding of the Ca(2+)-bound form of S-modulin/recoverin. We previously identified the S-modulin/recoverin site to interact with GRK1. In the present study, we identified its counterpart in GRK1. We synthesized 29 of GRK1 or GRK7 partial peptides that cover the entire sequence of GRK1/GRK7, and examined whether these peptides inhibit S-modulin/recoverin activity most probably by preoccupying the binding site for GRK1. The inhibition was the greatest with the N-terminal peptide (p1, aa 3-23 in GRK7). On mutation of each of eight amino acid residues highly conserved in the p1 region of more than 10 orthologs, the inhibition was significantly reduced in the mutation of Leu(6), Asn(12) and Tyr(15). We further examined the binding of the peptides, including mutated ones, to S-modulin/recoverin with a resonance mirror biosensor. The binding correlated well with the degree of the inhibition by a peptide. The inhibition, therefore, seemed to be due to a direct binding of the kinase peptide to the binding site of active S-modulin/recoverin. A GRK1 region close to its C-terminus also seemed to be the binding site for S-modulin/recoverin.     

Construction of self-assembled monolayer terminated with N-heterocyclic carbene-rhodium(I) complex moiety

Functionalization of self-assembled monolayer (SAM) of alkanethiolate with metal containing unit is one of the versatile methods to obtain functional surfaces such as heterogeneous catalysts. However, organic molecules that strongly bind to transition metals at SAM terminal are limited. Recently N-heterocyclic carbenes (NHCs) such as cyclic diaminocarbenes have emerged as strongly σ-donating ligands forming a robust bond with broad spectrum of transition metals. In the present study, for the purpose of establishment of a new robust basement for heterogeneous metal catalysts, a SAM of the alkanethiolate terminated with NHC-rhodium(I) complex moiety was prepared by utilizing a newly designed disulfide molecule bearing NHC-metal complex terminals. X-ray photoelectron spectroscopy (XPS) analysis and angle resolved XPS measurement revealed successful formation of the Rh-complex-terminated SAM on a gold substrate. Infrared reflection absorption spectroscopy (IRRAS) analysis suggested that the linker methylene chains connecting the rhodium complex moiety and the gold surface are in a loosely packed structure. This unique chemical species, NHC, would be a promising candidate as a basement for the construction of functional surface.     

Alkyl side chain length dependent compatibility of poly(4‐n‐alkylstyrene)s and 1,4‐rich polyisoprene blends

We investigated the compatibility of blends of 1,4‐rich polyisoprene (1,4‐PI) and poly(4‐n‐alkylstyrene)s with six kinds of n‐alkyl side groups, that is, methyl, ethyl, propyl, butyl, hexyl, and octyl focusing on carbon number of alkyl groups. Poly(4‐methylstyrene)/1,4‐PI blend was turned out to be immiscible at all temperature range adopted in this work and poly(4‐ethylstyrene)/1,4‐PI blend revealed UCST type phase behavior, while the others were found to be compatible. The phase diagrams of poly(4‐ethylstyrene)/1,4‐PI blends were obtained by optical microscopy, and the temperature dependence of the Flory‐Huggins interaction parameter χ has been estimated to be χ = ?0.036 + 24/T by applying lattice theory, where T is the absolute temperature. From this relationship χ value at room temperature (298 K) was calculated to be 0.045, the value is reasonably low for miscible polymers system. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2017 , 55 , 1791–1797     

A survey of metabolic changes in potato leaves by NMR‐based metabolic profiling in relation to resistance to late blight disease under field conditions

Non‐targeted nuclear magnetic resonance (NMR)‐based metabolic profiling was applied to potato leaves to survey metabolic changes associated with late blight resistance under field conditions. Potato plants were grown in an experimental field, and the compound leaves with no visible symptoms were collected from 20 cultivars/lines at two sampling time points: (i) the time of initial presentation of symptoms in susceptible cultivars and (ii) 12 days before this initiation. ¹H NMR spectra of the foliar metabolites soluble in deuterium oxide‐ or methanol‐d₄‐based buffers were measured and used for multivariate analysis. Principal component analysis for six cultivars at symptom initiation showed a class separation corresponding to their levels of late blight resistance. This separation was primarily explained by higher levels of malic acid, methanol, and rutin and a lower level of sucrose in the resistant cultivars than in the susceptible ones. Partial least squares regression revealed that the levels of these metabolites were strongly associated with the disease severity measured in this study under field conditions. These associations were observed only for the leaves harvested at the symptom initiation stage, but not for those collected 12 days beforehand. Subsequently, a simple, alternative enzymatic assay for l ‐malic acid was used to estimate late blight resistance, as a model for applying the potential metabolic marker obtained. This study demonstrated the potential of metabolomics for field‐grown plants in combination with targeted methods for quantifying marker levels, moving towards marker‐assisted screening of new cultivars with durable late blight resistance. Copyright © 2016 John Wiley & Sons, Ltd.     

Precise synthesis of a series of poly(4‐n‐alkylstyrene)s and their glass transition temperatures

Poly(4‐n‐alkylstyrene)s with six kinds of n‐alkyl groups such as methyl, ethyl, propyl, butyl, hexyl, and octyl groups covering wide molecular weight range from around 5 k to over 100 k were precisely synthesized by living anionic polymerizations. It was confirmed that all the polymers obtained have narrow molecular weight distribution, that is, M_w/M_n is all less than 1.1, by SEC. T_gs of all the polymers were estimated by DSC measurements and it turned out to be clear that their molecular weight dependence was well described by the Fox–Flory equations. Furthermore, it is evident that T_g monotonically decreases as a number of carbon atoms of n‐alkyl group is increased, though T_g values are all 20 K or more higher than those reported previously for the same polymer series. This is because backbone mobility increases by introducing longer n‐alkyl side groups with high mobility, while T_g difference in between this work and the previous one may due to the experimental conditions and also to the molecular weight range adopted. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2017 , 55, 757–763     

Metal Ionically-controlled Optical Signaling Based on a Chromoionophore-derived Calix[4]crown

A chromoionophore-derived calix[4]crown, 1 , possessing an effective signal-controllable function by metal ionic inputs has been newly synthesized, whose function is mainly of our interest, by transforming the process of receptor activation to one that may be detected by an optical signal (i.e. color change), the basic feature of antagonist-agonist competition may be reproduced readily and visually detected. The process would be particularly new within the field of optical read-out receptors. Further, from the standpoint of material sciences, the controllable signal function may not only be welcome for molecular information processing, but also contribute to the design of new sensory materials.