Structure and dynamics in solvent-polarity-induced aggregates from a c60 fullerene-based dyad

A novel methanofullerene dyad based on a hydrophobic (acceptor C60 moiety)-hydrophilic (bridge with benzene and ester functionalities)-hydrophobic (donor didodecyloxybenzene) network is designed and synthesized. Electronic absorption spectral features revealed the molecule to exhibit a strong tendency to self-aggregate in binary solvent mixtures at room temperature, where the dielectric constant exceeds a critical value, approximately 30. The dynamic structure factors of these spherical aggregates revealed stretched exponential decay with sizes varying between 110 and 250 nm with an increasing concentration, estimated from the dynamic light scattering experiments. However, a loss of shape selectivity of these aggregates was noted at lower water volume fractions in the binary solvent mixtures. The water-extracted spherical clusters were identified to be fractals with a dimension of 1.85, leading to diffusion-limited cluster aggregation as the mechanistic route for clusterization.     

Donor-Acceptor Complexes in Copolymerization. XVI. NMR Analyses of Alternating and Random Copolymers of Styrene and α-Methylstyrene with Acrylonitrile and Methacrylonitrile

An NMR investigation was carried out on random and alternating copolymers of acrylonitrile (AN) with a-methylstyrene (MS) and methacrylonitrile (MAN) with α-methylstyrene and styrene (S). The alternating MS-AN copolymer, prepared by complexation with AlEti_1-5Cl_1-5, was found to have a predominantly coisotactic configuration which was attributed to the interaction between the CH₃ and CN groups. The cotacticity of the alternating copolymer was found to be independent of the temperature of polymerization and the amount of AlEt_1-5Cl_1-5 used for complexation. The NMR spectra of random MS-AN copolymers of varying compositions indicated a high value (0.85) for the coisotacticity probability parameter (σ). The equimolar random MS-AN copolymer was also found to have essentially alternating sequences which was attributed to their low reactivity ratios. The equimolar alternating MS-MAN copolymer was found to have a random stereochemical configuration in which the coisotactic placement was slightly preferrred over the cosyndiotactic placement. The NMR spectrum of the equimolar free radical initiated MS-MAN copolymer lacked the fine structure observed in the spectrum of the alternating copolymer which was attributed to the presence of other sequences. The equimolar alternating S-MAN copolymer was found to have a high coisotactic configuration similar to that observed in the MS-AN copolymer. The equimolar free radical initiated S-MAN copolymer had a random sequence distribution.     

Proteomic Analysis of Sarcoplasmic Peptides of Two Related Fish Species for Food Authentication

Detection of species-specific sarcoplasmic peptides can be used as proteomic markers for fish food authentication and identification of species of origin in processed products. In the present study, proteomics technology was employed for differential characterization of sarcoplasmic peptides of two closely related fish species, Sperata seenghala and Sperata aor. Species-specific peptides were searched in white muscle extracts of the two species for identification of unique peptides that might aid in differentiation of the species, under two-dimensional gel electrophoresis platform. A total of 19 proteins were identified by combined matrix-assisted laser desorption ionization time-of-flight mass spectrometry and liquid chromatography-tandem mass spectrometry, of which nine and two proteins were found to be unique to S. seenghala and S. aor, respectively. One of the proteins, triosephosphate isomerase (TPI) was found to have three isoforms, out of which two were specific to S. aor, and one was specific to S. seenghala. All the three isoforms of TPI were present in the mixed samples of raw protein extracts of S. seenghala and S. aor, an observation that can be exploited to differentiate between the species and detection of deceptive practices of fraudulent substitution of commercially valuable fish species with inferior ones and differential characterization between closely related fish species.     

A molecular simulation study of a cyclic siloxane with attached biphehylyl 4-allyloxybenzoate mesogens

Abstract

A molecular simulation study of a cyclic siloxane macromolecule based on a pentamethylcyclosiloxane core and biphenylyl 4-allyloxybenzoate mesogenic units is reported. Molecular dynamics and semi-empirical calculations were used to provide insight into the conformation and the dielectric properties of the material. Out of three proposed conformations of the molecules, a cylindrical conformation was found to be the most probable. The intermolecular interactions were found to be optimized for the case where the mesogenic groups were planar and parallel to each other. The calculated mesogen length and inter-mesogen distances were consistent with available X-ray data. Electrostatic interactions were found to make a very significant contribution to the total energy. For the cylindrical model, the major component of the dipole was calculated to be along the long axis of the molecules. This is consistent with the alignment of the molecules parallel to a low frequency applied electric field as found experimentally.     

A new criterion for the mixed crystal behaviour in the diatomic linear chain model

Lucovsky, Brodsky, Burstein (LBB) have studied the behaviour of mixed crystals by setting up a criterion for the existence of local mode frequencies in real crystals starting from a diatomic linear chain model. This, while successfully predicting the one and two mode behaviour for some systems fails to predict the mixed mode behaviour. We propose a similar criterion for the existence of gap modes, by demanding that the gap mode predicted by the diatomic linear chain model should lie within the gap of the real three dimensional solid for its existence. It is shown that the gap modes for various systems calculated using this criterion are in reasonable agreement with the experimental values. The infrared behaviour of mixed crystals has to be determined by examining the existence of local as well as gap modes for the two end members of the system. This generalized new criterion successfully predicts the mixed mode behaviour of III–V mixed crystals besides predicting the one and two mode behaviour, observed in infrared absorption of mixed alkali halioes and III-V compounds.     

Influence of fluid mixing on oscillations in recombinant fermentations with variable plasmid loss. A preliminary study

Continuous flow bioreactors with recombinant bacteria sometimes exhibit spontaneous sustained oscillations. The possibility and the conditions for such oscillations in large reactors are not known precisely. In this study are investigated these conditions with a model of incomplete mixing in large bioreactors. The dilution rate for oscillations is a nonlinear function of the mixing characteristics. Such a dependence limits the translation of inferences from oscillations in small well-mixed vessels to larger reactors, but also enables suitable control of the feed rate to large bioreactors either to regulate or to suppress oscillations. This revised version was published online in June 2006 with corrections to the Cover Date.     

Modelling a nematic liquid crystal

The bulk phase liquid crystalline behaviour of a cyclic siloxane with a pentamethylcyclosiloxane core and biphenyl-4-allyloxybenzoate mesogens (BCS) was studied using molecular dynamics (MD) and wide angle X-ray analysis. This material exhibits partial crystallinity at room temperature and liquid crystalline behaviour above 120° C. For the MD simulations an ensemble of 27 molecules with 135 mesogenic units was simulated and a molecular mechanics force field was used to model the structural anisotropy of the siloxane molecules. Simulations were carried out both at room temperature and at an elevated temperature (425 K). Room temperature simulations showed that, contrary to our initial assumptions, the low energy molecular conformations were not cylindrical but splayed in shape. During the simulation a smectic-like, tilted layer structure was found to evolve for the cluster when full atom potentials were used, while no such development was observed when electrostatic interactions were neglected. The presence of a tilted layered structure was also suggested by the X-ray data. These results indicate that long range electrostatic interactions are significant for the molecular system under study. In order to calculate the orientational order parameter, the orientation of the molecular axis had to be determined. This was achieved by describing the mesogen shapes to be ellipsoidal and defining the principal axis of the ellipsoids to be the molecular directors. By sampling over 200 ps of simulation at 425 K, the time averaged order parameter (S) was calculated. The calculated S of 0.36 was comparable to the value of 0.4-0.45 found from the experimental data. Apart from providing insight into the relative importance of the various competing forces in the formation of the liquid crystalline phase, these simulations are also expected to be useful in predicting the mesophase behaviour of liquid crystalline systems.     

NaIO4-DMF: a novel reagent for the oxidation of organic halides to carbonyl compounds

NaIO₄-DMF oxidises various primary and secondary halides to the corresponding aldehydes and ketones under mild conditions (150°C/40-60 min) in high yields (70-90%).     

An all-organic steroid-D-π-A modular design drives ferroelectricity in supramolecular solids and nano-architectures at RT

Confluence of a modular design approach and self-assembly with a 'steroid-D-π-A' module generates spontaneous polarization in solids and for the first time in nano-architectures constituted from organogels, at room temperature (RT).