Interplay between hydration and electrostatic attraction in ligand binding: direct observation of hydration barrier at reverse micellar interface

The recognition of a charged biomolecular surface by an oppositely charged ligand is governed by electrostatic attraction and surface hydration. In the present study, the interplay between electrostatic attraction and hydration at the interface of a negatively charged reverse micelle (RM) at different temperatures has been addressed. Temperature-dependent solvation dynamics of a probe H33258 (H258) at the reverse micellar interface explores the nature of hydration at the interface. Up to 45 degrees C, the environmental dynamics reported by the interface-binding probe H258 becomes progressively faster with increasing temperature and follows the Arrhenius model. Above 45 degrees C, the observed dynamics slows down with increasing temperature, thus deviating from the Arrhenius model. The slower dynamics at higher temperatures is interpreted to be due to increasing contributions from the motions of the surfactant head groups, indicating the proximity of the probe to the interface at higher temperatures. This suggests an increased electrostatic attraction between the ligand and interface at higher temperatures and is attributed to the change in hydration. Densimetric and acoustic studies, indeed, show a drastic increase in the apparent specific adiabatic compressibility of the water molecules present in RMs after 45 degrees C, revealing the existence of a softer hydration shell at higher temperatures. Our study indicates that the hydration layer at a charged interface acts both as physical and energetic barrier to electrostatic interactions of small ligands at the interface.     

Dual-labeled oligonucleotide probe for sensing adenosine via FRET: a novel alternative to SNPs genotyping

A novel FRET based strategy for DNA sequence analysis utilising base-discriminating fluorescence (BDF) nucleoside, (Py)U/(2-Ant)U, as donor in the dual-labelled oligonucleotide probe is reported; a selective/specific emission from acceptor, was observed upon excitation at the donor, only when the opposite base of the "smart" fluorescently labeled BDF nucleoside, (Py)U/(2-Ant)U, is adenine on the complementary target sequence.     

Design of a novel G-quenched molecular beacon: a simple and efficient strategy for DNA sequence analysis

G-quenched MBs are devised from readily available starting materials and used for sequence specific DNA detection with high efficiency.     

Hydration in protein folding: thermal unfolding/refolding of human serum albumin

Human serum albumin (HSA) is known to undergo both reversible and irreversible thermal unfolding and refolding, depending upon the experimental conditions (end temperature) at neutral pH. In this report we have used high precision densimetric and ultrasonic measurements to determine the apparent specific volume (phi v) and compressibility (phi k) of HSA at different unfolded and refolded states at two different end temperatures, 55 degrees C and 70 degrees C. The unfolded and refolded states were characterized using dynamic light scattering (DLS), circular dichroism (CD), picosecond-resolved fluorescence decay, and anisotropy of the single-tryptophan residue in HSA (Trp214). Both the unfolded states were allowed to refold by cooling wherein the former and latter processes were found to be reversible and irreversible, respectively, in nature. The results obtained from the densimetric and ultrasonic measurements reveal that the apparent specific volume and compressibility of the protein in the reversible protein unfolding process is preserved upon restoration of HSA to ambient temperature. However, a significant change in phi v and phi k occurs in the process of irreversible protein refolding (from 70 to 20 degrees C). The experimental observation is rationalized in terms of the exposure of domain IIA to an aqueous environment, resulting in the swelling of the protein to a higher hydrodynamic diameter. Our studies attempt to explore the extent of hydration associated with the structural integrity of the popular protein HSA.     

Design,synthesis and biological evaluation of 5-(2-(4-(substituted benzo[d]isoxazol-3-yl)piperazin-1-yl)acetyl)indolin-2-one and 5-(2-(4-substitutedpiperazin-1-yl)acetyl)indolin-2-one analogues as novel anti-tubercular agents

A series of thirty-six novel 5-(2-(4-(benzo[d]isoxazol-3-yl)piperazin-1-yl)acetyl)indolin-2-one and 5-(2-(4-substitutedpiperazin-1-yl)acetyl)indolin-2-one analogues were synthesized, characterized and screened for their in vitro anti-tubercular activity against Mycobacterium tuberculosis H37Rv strain. These compounds exhibited minimum inhibitory concentration between 1.56 and 50 μg/mL. Among these derivatives, compounds 10c, 10d, 10j, 10o and 10v (MIC 6.25 μg/mL) displayed moderate activity, while compounds 10e, 10l, 10q, 10w,10x, 12d, 12e and 12i (MIC 3.12 μg/mL) showed good anti-tubercular activity and compounds 10f, 10k, 10p, 10r, 12f, 12j and 12k (MIC 1.56 μg/mL) exhibited excellent anti-tubercular activity. In addition, MTT assay was accomplished on the active analogues of the series against mouse macrophage (RAW 264.7) cells to evaluate the cytotoxic effect of the newly synthesized compounds and selectivity index of the compounds was determined.     

Analyzing normal proliferating,hypoxic and necrotic regions of T-47D human breast cancer spheroids using Raman spectroscopy

Raman spectroscopy is an advanced chemical analytical technique that has gained significant interest in cancer research, in particular early detection and monitoring of cancer, with added advantages of non-invasive and real-time diagnosis. Recently, studies have shown its sensitivity to monitor chemical changes during cancer progression. This information will lead to identification of chemical markers (molecular fingerprints of chemical composition) that can be used as biological markers. In this study, we used a tumor spheroid model that mimics the characteristics of a non-vascular in vitro tumor model, we used a combination of Raman and multivariate approach to identify chemical changes associated with normal proliferating, hypoxic and necrotic regions of T-47D human breast cancer spheroid model. The results provide evidence that lipids, amide I, III and nucleic acid contents differ significantly in normal, hypoxic and necrotic regions. Principal component analysis loading plots has suggested that normal proliferating region separated with low amide I and high-tryptophan content compared to hypoxic and necrotic regions. These differences observed in three regions might be useful in identification of new spectral markers associated stress faced by each region progressing toward necrosis.     

Neuroprotective Ability of Apocynin Loaded Nanoparticles (APO-NPs) as NADPH Oxidase (NOX)-Mediated ROS Modulator for Hydrogen Peroxide-Induced Oxidative Neuronal Injuries

Apocynin (APO) is a known multi-enzymatic complexed compound, employed as a viable NADPH oxidase (NOX) inhibitor, extensively used in both traditional and modern-day therapeutic strategies to combat neuronal disorders. However, its therapeutic efficacy is limited by lower solubility and lesser bioavailability; thus, a suitable nanocarrier system to overcome such limitations is needed. The present study is designed to fabricate APO-loaded polymeric nanoparticles (APO-NPs) to enhance its therapeutic efficacy and sustainability in the biological system. The optimized APO NPs in the study exhibited 103.6 ± 6.8 nm and −13.7 ± 0.43 mV of particle size and zeta potential, respectively, along with further confirmation by TEM. In addition, the antioxidant (AO) abilities quantified by DPPH and nitric oxide scavenging assays exhibited comparatively higher AO potential of APO-NPs than APO alone. An in-vitro release profile displayed a linear diffusion pattern of zero order kinetics for APO from the NPs, followed by its cytotoxicity evaluation on the PC12 cell line, which revealed minimal toxicity with higher cell viability, even after treatment with a stress inducer (H₂O₂). The stability of APO-NPs after six months showed minimal AO decline in comparison to APO only, indicating that the designed nano-formulation enhanced therapeutic efficacy for modulating NOX-mediated ROS generation.     

Studies on ion-pair and triple-ion formation of some tetraalkylammonium salts in binary solvent mixtures of benzene and tetrahydrofuran at 298.15 K

Conductivities of some tetraalkylammonium halides, viz. tetrabutylammonium bromide (Bu₄NBr), tetrapentylammonium bromide (Pen₄NBr), tetrahexylammonium bromide (Hex₄NBr) and tetraheptylammonium bromide (Hep₄NBr) were measured at 298.15 K in THF + C₆H₆ mixtures with 10, 20, 30 and 40 mass% of C₆H₆. A minimum in the conductance values was observed as concentration increases, which dependent both on the salt and the solvent. The observed molar conductivities were explained by the formation of ion-pairs (M⁺ + X⁻ ↔ MX, K_P) and triple-ions (2 M⁺ + X⁻ ↔ M₂X⁺; M⁺ + 2X⁻ ↔ MX₂⁻, K_T). A linear relationship between the triple-ion formation constants [log(K_T/K_P)] and the salt concentrations at the minimum conductivity (log C_min) was given for all salts in C₆H₆ + THF mixtures. The formation of triple-ions might be attributed to the ion sizes in solutions in which coulombic interactions and covalent bonding forces act as the main forces between the ions (R₄N⁺ X⁻).     

Catechol violet as new, efficient, and versatile ligand for Cu(I)-catalyzed C-S coupling reactions

Combination of CuI and Catechol violet (CuI-CV) was employed as catalyst for the first time in the C-S coupling reaction of a wide variety of aromatic halides, such as aryl iodides, bromo pyridines, activated aryl chlorides, and vinyl iodide with thiols to afford the corresponding thioethers in good to excellent yields. Broad range of functional group tolerance present in both the coupling partners has been observed in this reaction protocol.     

Fluorescence switching of photochromic vinylpyrene-substituted 2′-deoxyguanosine

We synthesized C8-vinylpyrene-substituted 2′-deoxyguanosine ^VPyG and studied the photoregulated reversible E-Z isomerization. When E-isomer was irradiated with visible light (>420 nm), E- toZ-isomerization took place very rapidly, while upon irradiation with UV-light (∼365 nm), Z-isomer was converted to E-isomer. When Z-isomer was illuminated with 365-400 nm light, no fluorescence was observed, while E-isomer showed a very strong fluorescence emission, indicating that ^VPyG could be a useful fluorescence switching molecule.