Density-functional generalized-gradient and hybrid calculations of electromagnetic properties using Slater basis sets

In this paper we extend our density-functional theory calculations, with generalized gradient approximation and hybrid functionals, using Slater-type orbitals (STOs), to the determination of second-order molecular properties. The key to the entire methodology involves the fitting of all STO basis function products to an auxiliary STO basis, through the minimization of electron-repulsion integrals. The selected properties are (i) dipole polarizabilities, (ii) nuclear magnetic shielding constants, and (iii) nuclear spin-spin coupling constants. In all cases the one-electron integrals involving STOs were evaluated by quadrature. The implementation for (ii) involved some complexity because we used gauge-including atomic orbitals. The presence of two-electron integrals on the right-hand side of the coupled equations meant that the fitting procedure had to be implemented. For (iii) in the hybrid case, fitting procedures were again required for the exchange contributions. For each property we studied a number of small molecules. We first obtained an estimate of the basis set limit using Gaussian-type orbitals (GTOs). We then showed how it is possible to reproduce these values using a STO basis set. For (ii) a regular TZ2P quality STO basis was adequate; for (i) the addition of one set of diffuse functions (determined by Slater's rules) gave the required accuracy; for (iii) it was necessary to add a set of 1s functions, including one very tight function, to give the desired result. In summary, we show that it is possible to predict second-order molecular properties using STO basis sets with an accuracy comparable with large GTO basis sets. We did not encounter any major difficulties with either the selection of the bases or the implementation of the procedures. Although the energy code (especially in the hybrid case) may not be competitive with a regular GTO code, for properties we find that STOs are more attractive.     

A novel MCR of isocyanates, aldehydes, and dienophiles

[reaction: see text] A novel one-pot procedure for the three-component coupling reaction of isocyanates, aldehydes, and dienophiles (IAD reaction) has been developed. Condensation of isocyanates and aldehydes and subsequent Diels-Alder reactions with electron-deficient dienophiles furnishes endo-selective amino-substituted cyclohexenes in good yield.     

Photochemie organischer Festkörper

In den Jahren seiner Tätigkeit am Weizmann Institut of Science begann G. M. J. Schmidt seine Arbeiten über die Beziehungen zwischen der Struktur organischer Kristalle und der in ihnen stattfindenden chemischen Reaktionen, ein Forschungsvorhaben, das sich in der Folge als außergewöhnlich fruchtbar erwiesen hat. So wuchs seine ?Festkörper-Gruppe”? und wurde divergenter - Röntgenstrukturanalytiker, Organiker, Spektroskopiker und schließlich sogar Theoretiker wirkten mit. Professor Schmidt starb 1971. Als eines der Mitglieder dieser Gruppe folge ich nun der Einladung, über neuere Entwicklungen auf meinem Interessengebiet zu berichten. Ein Großteil der bisher untersuchten Reaktionen organischer Kristalle wird durch Licht oder andere Strahlung induziert. Dies ist eine natürliche Folge davon, daß Strahlung, ungleich den meisten chemischen Reaktanden, leicht die Oberfläche des Kristalls durchdringen und so die zu aktivierenden Orte erreichen kann. In diesem Beitrag sollen einige der in der Photochemie organischer Kristalle wirksamen Prinzipien aufgezeigt und anhand von Beispielen verdeutlicht werden, wobei nicht beabsichtigt ist, alle bisher untersuchten unterschiedlichen Reaktionstypen und Systeme zu erfassen. Es ist geboten, hier in Anerkennung auch eines anderen großen Wissenschaftlers zu gedenken, der vor kurzer Zeit verschied - Theodor Förster. Manche der Ideen, auf die ich im folgenden eingehe, wurzeln, wie so vieles in der jüngsten Entwicklung der Photochemie, in Professor Försters früheren Arbeiten.     

Structural basis for the highly selective inhibition of MMP-13

Inhibitors for matrix metalloproteinases (MMPs) are under investigation for the treatment of cancer, arthritis, and cardiovascular disease. Here, we report a class of highly selective MMP-13 inhibitors (pyrimidine dicarboxamides) that exhibit no detectable activity against other MMPs. The high-resolution X-ray structures of three molecules of this series bound to MMP-13 reveal a novel binding mode characterized by the absence of interactions between the inhibitors and the catalytic zinc. The inhibitors bind in the S1' pocket and extend into an additional S1' side pocket, which is unique to MMP-13. We analyze the determinants for selectivity and describe the rational design of improved compounds with low nanomolar affinity.     

Synthesis, binding affinity, and relaxivity of target-specific MRI contrast agents

Although magnetic resonance imaging (MRI) is one of the most important imaging modalities of the central nervous system (CNS), one of the main drawbacks of MRI is its limited specificity. This can potentially be partially alleviated by target-specific contrast agents. In the present paper we describe a simple high yield synthesis of two such gadolinium-based spiperone targeted MRI contrast agents, 1a and 1b. The R₁ relaxivities of 1a and 1b were evaluated and found to be 5.94 and 8.31 mM⁻¹ s⁻¹, respectively at 9.4T, while their R₂ relaxivities at the same magnetic field were found to be 18.05 and 22.60 mM⁻¹ s⁻¹, respectively. In addition and very importantly compound 1a, which is a gadolinium-based, spiperone-targeted MRI contrast agent, was found to preserve some of the spiperone affinity toward the dopamine D2 receptor. Compounds 1a and 1b thus represent potential agents for in vitro dopamine receptor imaging using MRI in experimental models. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Structure of microemulsions with gemini surfactant studied by solvatochromic probe and diffusion NMR

The structure of microemulsions prepared by the anionic gemini surfactant didodecyl diphenyl ether disulfonate (C12-DADS) was investigated by a solvatochromic probe and nuclear magnetic resonance (NMR) diffusion measurements. The NMR measurements indicate the presence of bicontinuous and oil-in-water microemulsions depending on microemulsion composition. The absorbance spectra of the solvatochromic probe, Nile red, indicate the solubilization of the probe in different sites, in agreement with the NMR findings. It was also found that the microemulsions were capable of dissolving the hydrophobic probe, Nile red, up to four times better than expected if it were simply dissolved in the toluene phase.     

Electrokinetic effects of adsorbed neutral polymers

On the basis of a previously developed hydrodynamic model for adsorbed polymers the charge flow along a charged interface with adsorbed (uncharged) polymer is calculated. An effective electrokinetic layer thickness is defined and its dependence on the characteristics of the adsorbed polymer and the ionic strength is studied. It is found that tails are very important for the hydrodynamic effects considered because they effectively screen the solvent flow from inner parts of the absorbed layer. The electrokinetic layer thickness increases with decreasing ionic strength, and tends to a limit equal to the hydrodynamic thickness at very low ionic strength.     

Aging effect on the mechanical properties of hybrid gels

Sol-gel derived unsupported films and thin rods have been obtained from co-hydrolysis of triethoxysilane and methyldiethoxysilane. The materials are flexible, dense and transparent. Films and rods have been aged for different periods of time in air at room temperature. The elastic modulus has been measured by means of tensile or flexural tests. Measurements showed an increase of elastic modulus with aging time and showed different values for films and rods. The observed evolution of mechanical properties has been related to a corresponding structural modification as highlighted mainly by MAS-NMR studies. Analyses pointed out the crucial role of condensation processes and showed that the stiffness increase arises from the formation of relatively few bonds which link and constrain pre-existing mobile network regions.