Inverse temperature transition of a biomimetic elastin model: reactive flux analysis of folding/unfolding and its coupling to solvent dielectric relaxation

The inverse temperature transition (ITT) of a biomimetic model for elastin, capped GVG(VPGVG) in liquid water, is investigated by a comprehensive classical molecular dynamics study. The temperature dependence of the solvation structure and dynamics of the octapeptide are compared using three common force fields, CHARMM, GROMOS, and OPLS. While these force fields differ in quantitative detail, they all predict this octapeptide to undergo a "folding transition" to closed conformations upon heating and a subsequent "unfolding transition" to open conformations at still higher temperatures, thus reproducing the ITT scenario. The peptide kinetics is analyzed within the reactive flux formalism applied to the largest-amplitude mode extracted from principal component analysis, and the solvent's dielectric fluctuations are obtained from the total water dipole autocorrelations. Most importantly, preliminary evidence for an intimate coupling of peptide folding/unfolding dynamics, and thus the ITT, and dielectric relaxation of bulk water is given, possibly being consistent with a "slave mode" picture.     

Novel fluoroacrylated copolymers: synthesis, characterization and properties

The development of polymer waveguides leads to synthesis of fluorinated amorphous polymers with high transmission capacity, potential to tune their optical properties by tailoring the molecular structure, together with good processability, easy handling, good flexibility and low cost.In this work we have investigated new thermoplastic fluoroacrylated copolymers, synthesized by radical copolymerization of fluoroalkene(s) with five-membered cyclic carbonate and a third monomer or transfer agent, both containing OH group susceptible to be used for grafting of photocrosslinkable groups. The reaction of hydroxy functionalized copolymers with different acrylating agents results in fluoroacrylated resins with molecular weight in the range of 2000-3000 g mol⁻¹, yield >75% and good solubility in reactive diluents. In the presence of photoinitiator(s), they were crosslinked under UV-radiation in order to obtain optical waveguides.The copolymers synthesized were characterized by ¹H, ¹⁹F and ¹³C NMR as well as FT-IR spectroscopies and have good thermal stability (T_d > 200 °C). The refractive indeces of hydroxy functionalized fluorooligomers and acrylated resins were found to range from 1.44 to 1.45 at 23 °C and the T_gs (by DSC) varied from 40 to 110 °C depending on the content of the cyclic monomer. The optical characteristics of these thermoplastic fluoroacrylated copolymers are under progress.     

Artificial glycosyl phosphorylases

alpha- and beta-Cyclodextrin 6(A),6(D)-diacids (1 and 2), beta-cyclodextrin-6-monoacid (14), beta-cyclodextrin 6(A),6(D)-di-O-sulfate (16) and beta-cyclodextrin-6-heptasulfate (19) were synthesised. Acids 1, 2 and 14 were made from perbenzylated alpha- or beta-cyclodextrin, by diisobutylaluminum hydride (DIBAL)-promoted debenzylation, oxidation and deprotection. Addition of molecular sieves was found to improve the debenzylation reaction. Sulfates 16 and 19 were made by sulfation of the appropriately partially protected derivatives and deprotection. Catalysis of 4-nitrophenyl glycoside cleavage by these cyclodextrin derivatives was studied. Compounds 1, 2 and 16 were found to catalyse the reaction, with the catalysis following Michaelis-Menten kinetics and depending first order on the phosphate concentration. In a phosphate buffer (0.5 M, 59 degrees C, pH 8.0), K(M) varied from 2-10 mM and the k(cat)/k(uncat) ratio from 80-1000 depending on the stereochemistry of the substrate and the catalyst, with 2 being the best catalyst and with the sulfated 16 also displaying catalytic ability. The monoacid 14 and the heptasulfate 19 were not catalytic.     

Biological activities of phthalocyanines. XII: Synthesis tumor uptake and biodistribution of 14C-labeled disulfonated and trisulfonated gallium phthalocyanine in C3H mice

The biodistribution and metabolism of 14C-labeled disulfonated and trisulfonated gallium phthalocyanine (Ga-PcS) was studied in radiation-induced fibrosarcoma tumor-bearing C3H mice. The [14C]Ga-PcS compounds were prepared via the condensation of [14C]phthalic acid and sulfophthalic acid in the presence of gallium chloride and characterized by their spectroscopic and chromatographic properties. The tissue concentrations of the dyes was measured by scintillation counting of the 14C and by extraction and fluorescence measurements. Elevated dye levels were found in the liver, lungs, kidneys and spleen as well as in the tumor. Lower sulfonation of Ga-PcS favored liver and spleen uptake whereas higher dye sulfonation resulted in greater kidney uptake. Both dyes showed high tumor uptake with peak concentrations exceeding those of most tissues except for the liver in the case of Ga-PcS2. The highest tumor uptake was observed with Ga-PcS3. Both dyes were slowly excreted from the body. The liver-feces pathway was favored in the case of Ga-PcS2 with high activities persisting in the liver, even after 21 days. The Ga-PcS3 was preferentially excreted via the kidney-urine pathway. High performance liquid chromatography analysis of the liver and tumor extracts of [14C]Ga-PcS3-treated animals did not reveal desulfonation of the dye. However, urine analysis showed the presence of radioactive metabolites lacking the characteristic phthalocyanine absorption.     

Importance of spatial quality of intense femtosecond pulses

The spatial quality of intense femtosecond pulses from chirped pulse amplification (CPA) systems is of great importance in order to reach very high peak intensity on the target. We review various aspects of this quality, present results obtained all along a CPA chain and discuss improvement implemented or still to be implemented.     

Locating the vertices of a steiner tree in an arbitrary metric space

Given a tree each of whose terminal vertices is associated with a given point in a compact metric space, the problem is to optimally associate a point in this space to each nonterminal vertex of the tree. The optimality criterion is the minimization of the sum of the lengths, in the metric space, over all edges of the tree. This note shows how a dynamic programming solution to this problem generalizes a number of previously published algorithms in diverse metric spaces, each of which has direct and significant applications to biological systematics or evolutionary theory.     

Syntheses and characterizations of bis(trialkoxysilyl)oligoimides. II. Syntheses and characterizations of fluorinated crosslinkable oligoimides with low refractive indices

Novel crosslinkable fluorinated oligoimides were prepared in two steps. The first involved the synthesis of oligoimides terminated with nadic or allylic double bonds, and the second step was materialized either by a radical addition of mercaptotrialkoxysilane derivatives onto nadic double bonds or a hydrosilylation reaction of hydrogenotrialkoxysilane derivative onto allylic double bonds. Three kinds of crosslinking of the trialkoxysilane end groups were studied. The first kind entailed a thermal self‐crosslinking of trialkoxysilane groups. The second process of crosslinking incorporated a bicomponent system—the crosslinked agent was 1,1,1‐tris(4‐hydroxyphenyl)ethane (TRIOH). The trialkoxysilane groups reacted with the hydroxyl–phenol groups of TRIOH to give thermally stable phenoxysilane bonds as well as a crosslinking network. The last method was also a bicomponent system; the oxalic acid was added into an oligoimide solution where by thermal treatment water was created. The water molecules hydrolyzed the trialkoxysilane groups into silanol groups that polycondensed into a crosslinked network following a sol–gel process. The mechanism of the different crosslinking reactions was investigated by Fourier transform infrared spectroscopy and solid‐state ²⁹Si NMR. The self‐crosslinked material prepared from precursor α,ω‐trimethoxysilyl fluorinated oligomer (M_n = 5500 g · mol^?1) exhibited a 10 wt % loss temperature under air higher than 420 °C and a low birefringence (Δn = 0.008) at 1.300 μm. © 2001 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 39: 2602–2619, 2001     

Design and analysis of a Schwarz coupling method for a dimensionally heterogeneous problem

In the present work, we propose and analyse an efficient iterative coupling method for a dimensionally heterogeneous problem. We consider the case of a 2D Laplace equation with non‐symmetric boundary conditions coupled with a corresponding 1D Laplace equation. We first show how to obtain the 1D model from the 2D one by integration along one direction, by analogy with the link between shallow water equations and the Navier–Stokes system. Then we focus on the design of a Schwarz‐like iterative coupling method. We discuss the choice of boundary conditions at coupling interfaces. We prove the convergence of such algorithms and give some theoretical results related to the choice of the location of the coupling interface, and to the control of the difference between a global 2D reference solution and the 2D coupled solution. These theoretical results are illustrated numerically. Copyright © 2014 John Wiley & Sons, Ltd.     

The irredundant ramsey number s(3, 7)

The irredundant Ramsey number s(m, n) is the smallest p such that for every graph G with p vertices, either G contains an n-element irredundant set or its complement G contains an m-element irredundant set. Cockayne, Hattingh, and Mynhardt have given a computer-assisted proof that s(3, 7) = 18. The purpose of this paper is to give a self-contained proof of this result. © 1995 John Wiley & Sons, Inc.