The role of covariance in the analysis of gamma-ray spectra

When a gamma-ray spectrum contains a number of photopeaks originating from the same nuclide, the calculation of nuclide activity depends not only on the values of, and uncertainties in, the photopeak areas, photopeak efficiencies, gamma-ray emission probabilities and peak area correction factors, but also on the correlations that exist between these quantities. When photopeaks corresponding to a group of nuclides overlap or are unresolved, simultaneous estimation of the activities of all the nuclides present in the group is necessary if the information contained in the spectrum is to be used efficiently — a procedure which can prove important when the only prominent photopeak associated with a nuclide of interest overlaps with the photopeak of another nuclide. Two procedures for activity estimation are described: both procedures take correlations into account; one procedure deals with the special case of activity estimation for a single nuclide, where unresolved photopeaks are absent or neglected; the other procedure deals with simultaneous activity estimation using all the photopeaks associated with an interrelated group of nuclides.     

Aromatic Polynitro Ether Derivatives of Cellulose

The nucleophilic reaction of sodium cellulosate in the form of membrane or cotton fabric with 2, 4-dinitrohalo-benzenes, 2, 4, 6-trinitrochlorobenzene, 2, 4, 6-trinitrobenzyl bromide, and 2, 4, 6-trinitrostyrene was investigated. The degree of substitution attained with the dinitroaryl derivatives was much higher than that with the trinitroaryl derivatives. The reaction proceeded through Meisen-heimer complexes, which in the case of the trinitro derivatives could be isolated. The ability of the polynitro phenyl ether derivatives of the cellulose to form n- and π-complexes was investigated using naphthalene and p-toluidine. No -π- complex was formed with the former, and the latter gave complexes only with the 2, 4, 6-trinitrobenzyl or -phenethyl cellulose derivatives but not with the trinitrophenyl. The results were explained as due to steric hindrance from the polymeric cellulosic backbone.     

Maximum feasibility guideline in the design and analysis of protein folding potentials

Protein folding potentials are expected to have the lowest energy for the native shape. The Linear Programming (LP) approach achieves exactly that goal for a training set, or indicates that this goal is impossible to obtain. If a solution cannot be found (i.e., the problem is infeasible) two possible routes are possible: (a) choosing a new functional form for the potential, (b) finding the best potential with a feasible subset of the data, and (or) detecting inconsistent subset of the data in the training set. Here, we explore option (b). A simple heuristic for finding an approximate solution to an infeasible set of linear inequalities is outlined. An approximately feasible solution is obtained iteratively, starting from a certain initial guess, by computing a series of analytic centers of the polyhedra defined by all the inequalities satisfied at the subsequent iterations. Standard interior point algorithms for Linear Programming can be used to compute efficiently the analytic center of a polyhedron. We demonstrate how this procedure can be used for the design of folding potentials that are linear in their parameters. The procedure shows an improvement in the quality of the potentials and sometimes points to flaws in the original data.     

Trialkyltetrathiafulvalene-sigma-tetracyanoanthraquinodimethane [R(3)TTF-sigma-TCNAQ] diads: synthesis, intramolecular charge-transfer properties, and X-ray crystal structure.

We report the use of the electron-donating 4,5-dipentyl-4'-methyl-TTF (TTF = tetrathiafulvalene) moiety in combination with the electron acceptor 11,11,12,12-tetracyanoanthraquinodimethane (TCNAQ) unit in the novel D-sigma-A diad molecules 11, 17, and 18. These compounds display a weak, broad, low-energy intramolecular charge-transfer (ICT) band in the UV-vis spectra (lambda(max) 430-450 nm). Cyclic voltammetric studies show two reversible one-electron oxidation processes for the R(3)TTF moiety, and a reversible two-electron reduction process for the TCNAQ moiety. The electron affinity of TCNAQ is significantly enhanced by the electron-withdrawing sulfonamide and sulfonic ester groups (compounds 17 and 18, respectively). Simultaneous electrochemistry and EPR (SEEPR) experiments show no significant intramolecular interaction between the R(3)TTF and TCNAQ moieties in compounds 11 and 18. X-ray crystallographic data are presented for 5, 11, and 20. The structure of 5 reveals hydrogen-bonded dimers. In molecule 11 the bond lengths and conformations of both donor and acceptor moieties are typical for neutral species. Compound 20 is an unusual calcium complex of TCNAQ derivative obtained by dicyanomethylation of anthraquinone-2-carboxylic acid.     

Solution equilibria of aromatic dinitroso compounds: a combined NMR and DFT study

Solution-state nitroso monomer-azodioxide equilibria and conformational freedom of several aromatic dinitroso derivatives, differing in the spacer group between the aromatic rings, were studied by one- and two-dimensional variable temperature ¹H NMR spectroscopy and by quantum chemical calculations. The proton signals of nitroso monomer-azodioxide mixtures revealed by low-temperature NMR were assigned and validated using B3LYP-D3/6-311+G(2d,p)/SMD level of theory. In almost all cases, a preference towards the formation of only one azodioxy isomer of aromatic dinitroso compounds was found, which was assigned to Z-dimer according to computational data. Nevertheless, the computed small energy difference between the Z- and E-isomer could not account for the extreme preference for Z-dimer formation, indicating an influence of entropic or solvent effects. The formation of shorter oligomers in solution was excluded based on integrated ¹H NMR signal intensities. The experimental results indicated an average dimerization Gibbs energy of about ??5 kJ/mol at 223 K and were found to be in very good correlation with dimerization energies obtained by solution-phase optimization.

     

Characterization of phosphopeptides from protein digests using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and nanoelectrospray quadrupole time-of-flight mass spectrometry

A two-step mass spectrometric method for characterization of phosphopeptides from peptide mixtures is presented. In the first step, phosphopeptide candidates were identified by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOFMS) based on their higher relative intensities in negative ion MALDI spectra than in positive ion MALDI spectra. The detection limit for this step was found to be 18 femtomoles or lower in the case of unfractionated in-solution digests of a model phosphoprotein, beta-casein. In the second step, nanoelectrospray tandem mass (nES-MS/MS) spectra of doubly or triply charged precursor ions of these candidate phosphopeptides were obtained using a quadrupole time-of-flight (Q-TOF) mass spectrometer. This step provided information about the phosphorylated residues, and ruled out nonphosphorylated candidates, for these peptides. After [(32)P] labeling and reverse-phase high-performance liquid chromatography (RP-HPLC) to simplify the mixtures and to monitor the efficiency of phosphopeptide identification, we used this method to identify multiple autophosphorylation sites on the PKR-like endoplasmic reticulum kinase (PERK), a recently discovered mammalian stress-response protein.