Site-Identification by Ligand Competitive Saturation (SILCS) assisted pharmacophore modeling

Database screening using receptor-based pharmacophores is a computer-aided drug design technique that uses the structure of the target molecule (i.e. protein) to identify novel ligands that may bind to the target. Typically receptor-based pharmacophore modeling methods only consider a single or limited number of receptor conformations and map out the favorable binding patterns in vacuum or with a limited representation of the aqueous solvent environment, such that they may suffer from neglect of protein flexibility and desolvation effects. Site-Identification by Ligand Competitive Saturation (SILCS) is an approach that takes into account these, as well as other, properties to determine 3-dimensional maps of the functional group-binding patterns on a target receptor (i.e. FragMaps). In this study, a method to use the FragMaps to automatically generate receptor-based pharmacophore models is presented. It converts the FragMaps into SILCS pharmacophore features including aromatic, aliphatic, hydrogen-bond donor and acceptor chemical functionalities. The method generates multiple pharmacophore hypotheses that are then quantitatively ranked using SILCS grid free energies. The pharmacophore model generation protocol is validated using three different protein targets, including using the resulting models in virtual screening. Improved performance and efficiency of the SILCS derived pharmacophore models as compared to published docking studies, as well as a recently developed receptor-based pharmacophore modeling method is shown, indicating the potential utility of the approach in rational drug design.     

An efficient protocol for the synthesis of benzoheterocyclic compounds via solid-state melt reaction (SSMR)

An efficient protocol for the synthesis of biologically active benzoheterocyclic compounds such as benzothiazoles, benzimidazoles, benzospirothiazoles, and quinoxaline scaffolds have been accomplished via solid state melt reaction (SSMR) with excellent yields. The new protocol does not require any catalyst, solvent, and workup. Two anti-tumor agents have been prepared to demonstrate the application of this new method.     

Synthesis and self aggregation properties of ester-functionalized heterocyclic pyrrolidinium surfactants

Linear fatty alcohols on reaction with chloro/bromo acetic acid in the presence of catalytic amount of p-toluene sulphonic acid monohydrate under solvent-free conditions are converted into alkyl-2-haloacetate which on reaction with N-methyl pyrrolidine gives ester-functionalized pyrrolidinium surfactants. Thus, new series of ester-functionalized heterocyclic pyrrolidinium head group containing cationic surfactants have been synthesized by green approach via energy saving and cost effective methodology. These new surfactants have been investigated for their surface properties by surface tension, conductivity, and fluorescence method. Surface properties of these surfactants have been found to be far better compared to conventional heterocyclic cationic surfactants having similar hydrophobic alkyl chain length.     

Magnetic Purcell Enhancement in a Nanoantenna-Spherical Bragg Resonator Coupled System

In this work, a novel approach for enhancing magnetic fields in all-dielectric nanoantennas using Spherical Bragg Resonators (SBR) is proposed, which can boost quantum emitters' magnetic transitions. A matrix method has been used to optimize the magnetic dipole resonance of a SiO₂/Si core-shell spherical nanoantenna. The radiative and non-radiative decay rate of a Eu³⁺ emitter with a quantum efficiency of ∼80% is studied. The findings revealed that the magnetic dipole nanoantenna resonance coupling with the SBR mode significantly enhances the modal magnetic field. A 4-layer SiO₂/Si SBR results in a Purcell factor of $\approx 5\times {10}^3$, the highest it has found in the literature, to the best of the knowledge. The work offers a theoretical demonstration of the potential of SBR to improve the performance of dielectric nanoantennas.