Identification of Pharmacophoric Fragments of DYRK1A Inhibitors Using Machine Learning Classification Models

Dual-specific tyrosine phosphorylation regulated kinase 1 (DYRK1A) has been regarded as a potential therapeutic target of neurodegenerative diseases, and considerable progress has been made in the discovery of DYRK1A inhibitors. Identification of pharmacophoric fragments provides valuable information for structure- and fragment-based design of potent and selective DYRK1A inhibitors. In this study, seven machine learning methods along with five molecular fingerprints were employed to develop qualitative classification models of DYRK1A inhibitors, which were evaluated by cross-validation, test set, and external validation set with four performance indicators of predictive classification accuracy (CA), the area under receiver operating characteristic (AUC), Matthews correlation coefficient (MCC), and balanced accuracy (BA). The PubChem fingerprint-support vector machine model (CA = 0.909, AUC = 0.933, MCC = 0.717, BA = 0.855) and PubChem fingerprint along with the artificial neural model (CA = 0.862, AUC = 0.911, MCC = 0.705, BA = 0.870) were considered as the optimal modes for training set and test set, respectively. A hybrid data balancing method SMOTETL, a combination of synthetic minority over-sampling technique (SMOTE) and Tomek link (TL) algorithms, was applied to explore the impact of balanced learning on the performance of models. Based on the frequency analysis and information gain, pharmacophoric fragments related to DYRK1A inhibition were also identified. All the results will provide theoretical supports and clues for the screening and design of novel DYRK1A inhibitors.     

水平层状介质中电磁场并矢Green函数的一种快速新算法

本文利用提取直射波并结合自适应数字滤波等技术提出一种计算水平层状介质中电磁场并矢Green函数的快速算法. 首先将谱域Green函数中表征均匀介质作用的直射波提取出来并对其积分进行解析计算,这种处理降低了谱域Green函数的奇异性,可在很大程度上缩短其积分收敛区间. 然后在将谱域Green函数剩余部分对应积分转化为三个快速下降积分的基础上,引入一种自适应数字滤波算法对其进行快速求解. 最后通过具体算例验证了本文所述算法的有效性. 关键词： 并矢Green函数 快速算法 水平层状介质     

三氧化钨/氧化银复合材料的水热法合成及其光催化降解性能研究

染料污染是水污染中最严重的问题之一,吸引了很多科学家的关注.人们尝试了很多方法去解决该问题,如化学氧化法、物理吸附法、光催化降解法和生物降解法等.与其他几种方法相比,光催化法有着低能耗、环保以及高效等优势.三氧化钨是常见的半导体材料,具有独特的光学性能,近年来受到了广泛的研究.本文以钨酸钠和硫脲为前驱体,通过水热法制备了三氧化钨/氧化银(WO_3/Ag_2O)复合材料,并用光催化降解亚甲基蓝来分析其光催化性能.通过X射线光电子能谱、X射线衍射、透射电子显微镜、扫描电子显微镜、紫外可见吸收光谱等表征手段对样品的形貌、晶格结构和光催化的性能进行表征.氧化银的带宽为1.2 e V,对可见光很敏感,三氧化钨和氧化银的复合使材料在可见光下的光催化活性显著增强,在可见光下对亚甲基蓝染料的光降解率可以达到98%.实验结果表明,复合材料中的三氧化钨纳米棒为六方相,其平均直径约为200 nm,平均长度约为4μm.而复合材料中的氧化银纳米颗粒为六方相,附着在氧化钨纳米棒的表面,平均晶粒尺寸为20 nm.氧化银的存在为复合材料提供了更多的反应活性位点.相较于单一组分,复合材料在可见光下的光吸收度更高,这说明三氧化钨和氧化银的复合改变了材料的能带结构.研究发现,三氧化钨和氧化银之间形成的异质结构是其优良光催化性能的来源.此外,三氧化钨和氧化银复合材料还具有良好的催化稳定性和化学稳定性.本文结果表明,可以通过给宽带隙的半导体材料复合一些带隙合适的金属氧化物以提升其光催化活性.     

超高强块体非晶合金的研究进展

研制具有极限力学性能的金属材料一直是材料研究人员的梦想.超高强块体非晶合金是一类具有极高断裂强度(4 GPa)、高热稳定性(玻璃化转变温度通常高于800 K)和高硬度(通常高于12 GPa)的新型先进金属材料,其代表合金材料Co-Ta-B的断裂强度可达6 GPa,为目前公开报道的块体金属材料的强度记录值.本文系统地综述了该类超高强度块体非晶合金的组分、热学性能、弹性模量及力学性能,阐述了该类材料的研发历程;以弹性模量为联系桥梁,阐明了该类超高强块体非晶合金材料各物理性能的关联性,并揭示了其高强度、高硬度的价键本质.相关内容对于材料工作者了解该类超高强度金属材料的性能和特点,并推进该类材料在航空航天先进制造、超持久部件、机械加工等领域的实际应用有着重要意义.     

A tunable multi-wavelength Brillouin–erbium fiber laser with fourfold Brillouin frequency spacing

We have experimentally demonstrated a tunable multi-wavelength Brillouin–erbium fiber laser with over 40 GHz spacing utilizing two cascaded double Brillouin-frequency-spacing cavities. In this laser configuration, two segments of 25 km-long single-mode fibers are used as Brillouin gain medium in each ring cavity, and a segment of 8 m-long erbium-doped fiber with 980 nm pump is employed to amplify Brillouin pump (BP). At BP wavelength of 1550 nm, BP power of 8.3 dBm (6.8 mW) and the maximum 980 nm pump power of 27.78 dBm (600 mW), seven output channels with fourfold Brillouin-frequency spacing, and the tuning range of 15 nm from 1545 to 1560 nm are achieved. The proposed multi-wavelength Brillouin–erbium fiber laser has wide applications, such as in microwave signal generation and optical communications.     

双轴压缩下颗粒物质剪切带的形成与发展

本文采用离散元方法,研究了双轴压缩的颗粒体系在刚性边界约束下,局部剪切带的形成和发展过程,注重分析了细观的体积分数、配位数、颗粒旋转角度等参数以及力链结构形态的演变.并从颗粒体系jamming 相图中J点附近的边壁压强和配位数随体积分数的标度规律出发,分析了剪切带内外的体积分数和配位数的变化.结果表明:剪切带形成于颗粒体系的塑性变形开始阶段,此时体系发生剪胀,颗粒体积分数减小,颗粒体系抵抗旋转的能力降低,开始出现细小剪切带,随着轴向应变的继续,细小剪切带发生连接,最终导致贯穿性优势剪切带形成 关键词： 颗粒物质 力链 双轴压缩 剪切带     

An improved multimodal method for sound propagation in nonuniform lined ducts

An efficient method is proposed for modeling time harmonic acoustic propagation in a nonuniform lined duct without flow. The lining impedance is axially segmented uniform, but varies circumferentially. The sound pressure is expanded in term of rigid duct modes and an additional function that carries the information about the impedance boundary. The rigid duct modes and the additional function are known a priori so that calculations of the true liner modes, which are difficult, are avoided. By matching the pressure and axial velocity at the interface between different uniform segments, scattering matrices are obtained for each individual segment; these are then combined to construct a global scattering matrix for multiple segments. The present method is an improvement of the multimodal propagation method, developed in a previous paper [Bi et al., J. Sound Vib. 289, 1091-1111 (2006)]. The radial rate of convergence is improved from O(n(-2)), where n is the radial mode indices, to O(n(-4)). It is numerically shown that using the present method, acoustic propagation in the nonuniform lined intake of an aeroengine can be calculated by a personal computer for dimensionless frequency K up to 80, approaching the third blade passing frequency of turbofan noise.     

Entropy and HUHPM approach for complex networks

The general formulas of the network for the power exponents of the degree distribution and the entropy are presented based on an open Liouville equation for the driven network. The proposed harmonious unifying hybrid preferential models (HUHPM) have been studied using the obtained formalism, in which the simulating results are quite consistent with the theoretical results.     

利用法布里-珀罗腔抑制电光相位调制中的剩余幅度调制

激光经电光相位调制后,由于剩余幅度调制的存在造成调制边带幅度不相等。利用法布里-珀罗腔的透射特性和Pound-Drever-Hall技术对通过法布里-珀罗腔的调制光正、负一级边带的幅度产生不同的衰减,使得调制边带的幅度相等,从而实现对电光相位调制中剩余幅度调制的抑制。采用该方法,理论上计算了调制光经法布里-珀罗腔后的光外差光谱信号,获得锁定法布里-珀罗腔后调制边带幅度的不对称度较腔锁定前减小四个数量级。实验研究了调制光经法布里-珀罗腔透射的光外差光谱,结果表明将法布里-珀罗腔锁定于该透射光外差光谱中心零位时,对剩余幅度调制的抑制程度可达45 dB。     

一种基于结构性改变的光子晶体光纤光栅理论研究

对一种新型基于结构性改变的光子晶体光纤光栅原理进行了研究.采用多极法分析了结构性改变对折射率的影响,得到有效折射率与包层气孔塌缩之间的关系,建立了结构性改变光子晶体光纤光栅模型.利用耦合模理论对所成光栅性能进行了分析,重点研究了包层空气孔层数、空气孔占空比、气孔塌缩程度对光栅谐振波长、带宽的影响.研究结果表明,光子晶体...