Insights into the Kramers’ flux‐over‐population rate for chemical reactions in liquid phases through the matrix transport equation

Kramers’ equation models a chemical reaction as a Brownian particle diffusing over a potential barrier under the influence of medium viscosity. In the case of high viscosity, the equation reduces to a simpler Smoluchowski equation. In this report, we have contrived an equivalent matrix‐transport equation that relates the ordered pair (activity, flux) of the output (activated complex) to that of the input (reactant). With an initial condition of the Dirac delta type placed at the location of the reactant, and a reflecting boundary condition set on the reactant state, and an absorbing boundary condition on the activated complex state, we are able to prove the equality relation between the mean first passage time, , for the diffusion and the inverse of the rate constant, k^?1, for the reaction counterpart. We have also derived , where λ_i is the ith eigenvalue of the Smoluchowski differential operator stipulated with the above‐mentioned boundary conditions. We have also deduced that, in the long time limit, the number of particles remaining inside the diffusion domain decays exponentially with a relaxation time just the same as the concentration of the reactant does for a first‐order reaction system.     

Sequential and selective Buchwald-Hartwig amination reactions for the controlled functionalization of 6-bromo-2-chloroquinoline: synthesis of ligands for the Tec Src homology 3 domain

Src homology 3 (SH3) domains are highly conserved protein-protein interaction domains that mediate important biological processes and are considered valuable targets for the development of therapeutic agents. In this paper, we report the preparation of a range of new 6-heterocyclic substituted 2-aminoquinolines using Buchwald-Hartwig chemistry. 6-Heterocyclic substitution of the 2-aminoquinoline has provided ligands with increased binding affinity for the SH3 domain relative to the lead compound, 2-aminoquinoline, that are the highest affinity ligands prepared to date. The key step in the synthesis of these compounds required a selective Buchwald-Hartwig amination of an aryl bromide in the presence of an activated heteroaryl chloride. The optimization of reaction conditions to achieve the selective amination is discussed and has allowed for cross-coupling with a range of cyclic amines. Introduction of the amino functionality of the 6-heterocyclic 2-aminoquinolines involved additional Buchwald-Hartwig chemistry utilizing lithium bis(trimethylsilyl)amide as an ammonia equivalent.     

A study of degradation of low density polyethylene under natural weathering conditions

The effects of natural weathering on mechanical properties and chemical structure of low density polyethylene have been studied. It is found that no simple correlation exists between the development of carbonyl groups and mechanical properties such as stress or strain at break or elastic modulus. It appears that there is recovery in the mechanical properties during the winter months.     

Discovery of DNA dyes Hoechst 34580 and 33342 as good candidates for inhibiting amyloid beta formation: in silico and in vitro study

Combining Lipinski’s rule with the docking and steered molecular dynamics simulations and using the PubChem data base of about 1.4 million compounds, we have obtained DNA dyes Hoechst 34580 and Hoechst 33342 as top-leads for the Alzheimer’s disease. The binding properties of these ligands to amyloid beta (Aβ) fibril were thoroughly studied by in silico and in vitro experiments. Hoechst 34580 and Hoechst 33342 prefer to locate near hydrophobic regions with binding affinity mainly governed by the van der Waals interaction. By the Thioflavin T assay, it was found that the inhibition constant IC50 ≈ 0.86 and 0.68 μM for Hoechst 34580 and Hoechst 33342, respectively. This result qualitatively agrees with the binding free energy estimated using the molecular mechanic-Poisson Boltzmann surface area method and all-atom simulations with the AMBER-f99SB-ILDN force field and water model TIP3P. In addition, DNA dyes have the high capability to cross the blood brain barrier. Thus, both in silico and in vitro experiments have shown that Hoechst 34580 and 33342 are good candidates for treating the Alzheimer’s disease by inhibiting Aβ formation.     

Myoglobin Detection: Utilizing Functional Magnetic Hybrid and Silica Micro Particles and Simple Molding Based Micro Channel Fabrication

A magnetic separator attached in a zig zag flow channel assembly has been fabricated to detect myoglobin on the micro particles. An anti‐myoglobin conjugated magnetic hybrid and myoglobin conjugated silica micro particles were prepared and used for myoglobin detection on channel. For the detections, the competitive assay principle was followed based on affinity interaction of anti‐myoglobin‐myoglobin. The caliberation curve was plotted based on the deposit percentage of myoglobin conjugated silica micro particles. The calibration curve of the myoglobin showed the linear range between 1 × 10^?8 ‐ 5 × 10^?11 (M) (R² = 0.9944). The minimum detectable concentration was 300 pg/mL. Hence all that concludes that, the application of zig zag flow channel with magnetic separator has offered new, simple and rapid approach for detecting myoglobin in whole blood samples with in 30 min.     

Transparent,flexible and solid-state supercapacitors based on room temperature ionic liquid gel

This paper describes a novel strategy to make fully transparent, solid-state and flexible supercapacitors based on room temperature ionic liquid (RTIL) gel and ITO electrodes coated on transparent polymer substrate without a separator, which enables the roll-to-roll technique for fabrication of such supercapacitors as printable devices. This is the first type of transparent electrochemical double layer capacitor (EDLC) based on ionic liquid gel.     

Prediction of Chemical-Physical Properties by Neural Networks for Structures

Here we present an overview of a new approach to cheminformatics based on recursive neural networks. This approach allows for combining the flexibility and advantages of neural networks with the representational power of structured domains. Current advances, which include applications to the prediction of the solvation free energy of small molecules in water and of the glass transition temperature of (meth)acrylic polymers are reported.     

Recursive neural networks prediction of glass transition temperature from monomer structure: an application to acrylic and methacrylic polymers

We propose a new method based on a Recursive Neural Network (RecNN) for predicting polymer properties from their structured molecular representations. RecNN allows for a completely novel approach to QSPR analysis by direct adaptive processing of molecular graphs. This model joins the representational power of structured domains with Neural Network ability to capture underlying complex relationships in the data by a process of training from examples. To this aim, a structured representation was designed for the modelling of polymer structures. The adopted representation can account also for average macromolecule characteristics, such as degree of polymerization, stereoregularity, comonomer distribution. To begin with, this model was applied to the prediction of the glass transition temperature of (meth)acrylic polymers with different degree of main chain tacticity. The results so far obtained indicate that the proposed representation of polymer structure can convey information on both the repeating unit structure and average polymer features. The ability of the proposed RecNN method of treating this structured representation makes this method more general and flexible with respect to standard literature methods. Moreover, the same model can handle at the same time the Tg of polymer samples present in only one tacticity form together with that of polymer with different stereoregularity.     

One‐Pot Synthesis of 13‐Acetyl‐9‐methyl‐11‐oxo(or thioxo)‐8‐oxa‐10,12‐diazatricyclo[7.3.1.02,7]trideca‐2,4,6‐trienes under Microwave Irradiation

Oxygen‐bridged monastrol analogs, 13‐acetyl‐9‐methyl‐11‐oxo(or thioxo)‐8‐oxa‐10,12‐diazatricyclo[7.3. 1.0^2,7]trideca‐2,4,6‐trienes, were synthesized by one‐pot three component condensation reaction of substituted salicylaldehyde, acetylacetone and urea or thiourea with nontoxic, inexpensive, and easily available NaHSO₄ as catalyst under microwave irradiation and solvent‐free conditions in short time with good yields. The structures of the products were characterized by IR, ¹H NMR, ¹³C NMR spectra, and elemental analyses.