A kernel machine-based fMRI physiological noise removal method

Functional magnetic resonance imaging (fMRI) technique with blood oxygenation level dependent (BOLD) contrast is a powerful tool for noninvasive mapping of brain function under task and resting states. The removal of cardiac- and respiration-induced physiological noise in fMRI data has been a significant challenge as fMRI studies seek to achieve higher spatial resolutions and characterize more subtle neuronal changes. The low temporal sampling rate of most multi-slice fMRI experiments often causes aliasing of physiological noise into the frequency range of BOLD activation signal. In addition, changes of heartbeat and respiration patterns also generate physiological fluctuations that have similar frequencies with BOLD activation. Most existing physiological noise-removal methods either place restrictive limitations on image acquisition or utilize filtering or regression based post-processing algorithms, which cannot distinguish the frequency-overlapping BOLD activation and the physiological noise. In this work, we address the challenge of physiological noise removal via the kernel machine technique, where a nonlinear kernel machine technique, kernel principal component analysis, is used with a specifically identified kernel function to differentiate BOLD signal from the physiological noise of the frequency. The proposed method was evaluated in human fMRI data acquired from multiple task-related and resting state fMRI experiments. A comparison study was also performed with an existing adaptive filtering method. The results indicate that the proposed method can effectively identify and reduce the physiological noise in fMRI data. The comparison study shows that the proposed method can provide comparable or better noise removal performance than the adaptive filtering approach.     

Isotopic composition of atmospheric moisture from pan water evaporation measurements

A continuous and reliable time series data of the stable isotopic composition of atmospheric moisture is an important requirement for the wider applicability of isotope mass balance methods in atmospheric and water balance studies. This requires routine sampling of atmospheric moisture by an appropriate technique and analysis of moisture for its isotopic composition. We have, therefore, used a much simpler method based on an isotope mass balance approach to derive the isotopic composition of atmospheric moisture using a class-A drying evaporation pan. We have carried out the study by collecting water samples from a class-A drying evaporation pan and also by collecting atmospheric moisture using the cryogenic trap method at the National Institute of Hydrology, Roorkee, India, during a pre-monsoon period. We compared the isotopic composition of atmospheric moisture obtained by using the class-A drying evaporation pan method with the cryogenic trap method. The results obtained from the evaporation pan water compare well with the cryogenic based method. Thus, the study establishes a cost-effective means of maintaining time series data of the isotopic composition of atmospheric moisture at meteorological observatories. The conclusions drawn in the present study are based on experiments conducted at Roorkee, India, and may be examined at other regions for its general applicability.     

Bio-inspired computation using synthetic genetic network

Potential of synthetic genetic network, Repressilator, to work as logical computing unit is observed. It is shown that two variables of gene network yield simultaneously, the basic AND or OR gate with their complementary NAND or NOR gate, with the variation of the internal parameter of the system. This allows the gene network to work as a strong candidate for parallel computing. Stability or robustness of gates is also checked in noisy background.     

Mathematical models for drug delivery to chronic patients

Mathematically, analysis of drug delivery kinetics involves two moving boundary problems: diffusion front and eroding front. In this paper, we have models for drug delivery for the sites which can be enclosed by spherical shaped matrices covered by membranes and these problems are helpful for designing the drug delivery devices to deliver the drug inside from outside and a corresponding device supplying drug from inside. Once the time required for treatment and rate of drug delivery is known from medical diagnosis, this analysis can design a device releasing the drug/active agent over a long period of time. The purpose of such drug delivery is to achieve more effective therapies while eliminating the effect of over dosing and maintaining drug levels within the desired levels. The device may work on optimal use of drug and increase the patient’s convenience. The proposed models provide design for eroding tumor or chemotherapy to cancerous regions. The results have been obtained for steady state release rate, zero order release time and life time of the device and discussed. It has been observed that zero order time and life time increase by introducing a membrane of uniform thickness.     

Promiscuous fatty acyl CoA ligases produce acyl-CoA and acyl-SNAC precursors for polyketide biosynthesis

The study of bioactive natural products has undergone rapid advancement with the cloning and sequencing of large number of gene clusters and the concurrent progress to manipulate complex biosynthetic systems in heterologous hosts. The genetic reconstitution necessitates that the heterologous hosts possess substrate pools that could be coordinately supplied for biosynthesis. Polyketide synthases (PKS) utilize acyl-coenzyme A (CoA) precursors and synthesize polyketides by repetitive decarboxylative condensations. Here we show that acyl-CoA ligases, which belong to a large family of acyl-activating enzymes, possess potential to produce varied starter CoA precursors that could be utilized in polyketide biosynthesis. Incidentally, such protein domains have been recognized in several PKS and nonribosomal peptide synthetase gene clusters. Our studies with mycobacterial fatty acyl-CoA ligases (FACLs) show remarkable tolerance to activate a variety of fatty acids that contain modifications at alpha, beta, omega, and omega-nu positions. This substrate flexibility extends further such that these proteins also efficiently utilize N-acetyl cysteamine, the shorter acceptor terminal portion of CoASH, to produce acyl-SNACs. We show that the in situ generated acyl-CoAs and acyl-SNACs could be channeled to types I and -III PKS systems to produce new metabolites. Together, the promiscuous activity of FACL and PKSs provides new opportunities to expand the repertoire of natural products.     

Excess molar volumes of methylcyclohexane+benzene, +methylbenzene, +1,4-dioxane,and +tetrahydrofuran at 303.15 K

Excess molar volumes V_m^E as function of mole fraction x for methylcyclohexane + benzene, + methylbenzene, + 1,4-dioxane, and + tetrahydrofuran are reported at 303.15 K. The excess molar volumes are positive and indicate the presence of weak interactions.     

Me2NN]Co(eta6-toluene): O=O, N=N, and O=N bond cleavage provides beta-diketiminato cobalt mu-oxo and imido complexes

The synthesis and structure of a novel beta-diketiminato Co(I) arene adduct [Me2NN]Co(eta6-toluene) (2) are described, that serves as a synthon to the reactive, "naked" 12-electron [Me2NN]Co fragment via loss of toluene in its reactions with dioxygen, organoazides, and a nitrosobenzene. Exposure of 2 to dioxygen in ether leads to {[Me2NN]Co}2(mu-O)2 (3), a rare example of a cobalt-oxo complex thermally stable at room temperature. The X-ray structure of 3 reveals a short Co-Co separation of 2.716(4) A and exhibits positional disorder for the bridging oxo groups; the predominant configuration contains oxygen atoms in square-planar sites with short Co-O distances (1.784(3) and 1.793(4) A). Reaction of 2 with organoazides N3R (R = 3,5-Me2C6H3 (Ar) or 1-adamantyl (Ad)) results in the formation of imido complexes whose structure depends on the nature of the azido substituent. The synthesis and structures of both {Me2NN]Co}2(mu-NAr)2 (4) with arylimido groups in tetrahedral bridging sites or the three-coordinate, 16-electron [Me2NN]CoNAd (5) are described. The X-ray structure of terminal imide 5 reveals a short Co-N bond distance (1.624(4) A) and only somewhat bent imido linkage (Co-N-C = 161.5(3) degrees ) consistent with a significant degree of multiple bond character. Complex 2 cleaves the O=N bond of the nitrosobenzene O=NAr (Ar = 3,5-Me2C6H3) to form the binuclear oxo-imido complex {[Me2NN]Co}2(mu-O)(mu-NAr) (6) that possesses a structure intermediate between square-planar 3 and tetrahedral 4 in which the [Me2NN]Co fragments are mutually orthogonal.     

Quantitative TLC Analysis of Sterol (24β-Ethylcholesta-5,22E,25-triene-3β-ol) in Agnimantha (Clerodendrum phlomidis Linn)

A quantitative method using silica gel 60F₂₅₄ high performance thin layer chromatography plates, automated bandwise sample application, and automated visible mode densitometric method has been developed for the determination of 24β-ethylcholesta-5,22E,25-triene-3β-ol (ECTO) in the aerial part of Clerodendrum phlomidis. ECTO was used as a chemical marker for the standardization of C. phlomidis plant extracts. The separation was performed on silica gel 60F₂₅₄ TLC plates using chloroform-methanol (98.5: 1.5, v/v) as mobile phase. The quantitation of ECTO was carried out using the densitometric reflection/absorption mode at 650 nm after post chromatographic derivatization with anisaldehyde reagent. A precise and accurate quantification can be performed in the linear working concentration range of 150–400 ng band⁻¹ with good correlation (r ² = 0.996). The method was validated for peak purities, precision, robustness, limit of detection (LOD) and quantitation (LOQ), etc. as per ICH guidelines.     

Development and Validation of Highly Sensitive LC–ESI-MS/MS Method for Bortezomib and Its Applications for Plasma Levels and Drug Content of Branded and Generic Formulations in India

In the present study, a highly sensitive and reproducible bio-analytical method was developed using LC–ESI-MS/MS to assess the lower plasma levels of bortezomib in multiple myeloma patients. The gradient elution was optimized using reverse-phase C18 column with mobile phases consisting of water and acetonitrile in 0.1% formic acid. Multiple reaction monitoring mode was used for quantification using precursor-to-product ion transition for bortezomib and sulfadiamethoxine was used as internal standard. This method was validated with a linearity range of 0.195–25 ng mL^?1. Intra-day and inter-day accuracy was 99.17–101.89% and 95.01–102.92% with precision of?<?9.87% and?<?8.77%, respectively. Bortezomib was stable in plasma samples stored at ? 80 °C for up to 10 months. The lower limit of quantification was found to be 0.195 ng mL^?1. This method was also found to be capable of quantifying bortezomib trough levels (ranging 0.19–0.7 ng mL^?1) in plasma of multiple myeloma patients post-cycle 1–6. Bortezomib content in the commonly prescribed generic formulations was also studied. The concentration in all formulations was within the 90–110% of the innovator, as prescribed by the USFDA, ruling out their role blood level variation. The study supports the use of this method for trough level estimation and therapeutic drug monitoring of bortezomib in multiple myeloma patients.

     

A Highly Ultrafine Core–Shell Ir–Cu Bimetallic Nanoparticles and Their Application in Catalytic Oxidation of Textile Dye,Congo Red,by Hexacyanoferrate(III) Ions: A Kinetic Approach

Kinetics and Catalysis - Bimetallic nanoparticles (BMNPs), a pioneer class of material research for catalysis, were intensively explored. We report a versatile catalyst, core–shell...