Nonuniform sampling and maximum entropy reconstruction applied to the accurate measurement of residual dipolar couplings

Residual dipolar couplings (RDC) provide important global restraints for accurate structure determination by NMR. We show that nonuniform sampling in combination with maximum entropy reconstruction (MaxEnt) is a promising strategy for accelerating and potentially enhancing the acquisition of RDC spectra. Using MaxEnt-processed spectra of nonuniformly sampled data sets that are reduced up to one fifth relative to uniform sampling, accurate 13C'-13Calpha RDCs can be obtained that agree with an RMS of 0.67 Hz with those derived from uniformly sampled, Fourier transformed spectra. While confirming that frequency errors in MaxEnt spectra are very slight, an unexpected class of systematic errors was found to occur in the 6th significant figure of 13C' chemical shifts of doublets obtained by MaxEnt reconstruction. We show that this error stems from slight line shape perturbations and predict it should be encountered in other nonlinear spectral estimation algorithms. In the case of MaxEnt reconstruction, the error can easily be rendered systematic by straightforward optimization of MaxEnt reconstruction parameters and self-cancels in obtaining RDCs from nonuniformly sampled, MaxEnt reconstructed spectra.     

Spectrum analysis of seismic surface waves and its applications in seismic landmine detection

In geophysics, spectrum analysis of surface waves (SASW) refers to a noninvasive method for soil characterization. However, the term spectrum analysis can be used in a wider sense to mean a method for determining and identifying various modes of seismic surface waves and their properties such as velocity, polarization, etc. Surface waves travel along the free boundary of a medium and can be easily detected with a transducer placed on the free surface of the boundary. A new method based on vector processing of space-time data obtained from an array of triaxial sensors is proposed to produce high-resolution, multimodal spectra from surface waves. Then individual modes can be identified in the spectrum and reconstructed in the space-time domain; also, reflected waves can be separated easily from forward waves in the spectrum domain. This new SASW method can be used for detecting and locating landmines by analyzing the reflected waves for resonance. Processing examples are presented for numerically generated data, experimental data collected in a laboratory setting, and field data.     

Spin-label saturation-recovery EPR at W-band: applications to eye lens lipid membranes

Saturation-recovery (SR) EPR at W-band (94 GHz) to obtain profiles of the membrane fluidity and profiles of the oxygen transport parameter is demonstrated for lens lipid membranes using phosphatidylcholine (n-PC), stearic acid (n-SASL), and cholesterol analog (ASL and CSL) spin labels, and compared with results obtained in parallel experiments at X-band (9.4 GHz). Membranes were derived from the total lipids extracted from 2-year-old porcine lens cortex and nucleus. Two findings are especially significant. First, measurements of the spin-lattice relaxation times T1 for n-PCs allowed T1 profiles across the membrane to be obtained. These profiles reflect local membrane properties differently than profiles of the order parameter. Profiles obtained at W-band are, however, shifted to longer T1 values compared to those obtained at X-band. Second, using cholesterol analog spin labels and relaxation agents (hydrophobic oxygen and water-soluble NiEDDA), the cholesterol bilayer domain was discriminated in membranes made from lipids of the lens nucleus. However, membranes made from cortical lipids show a single homogeneous environment. Profiles of the oxygen transport parameter obtained from W-band measurements are practically identical to those obtained from X-band measurements, and are very similar to those obtained earlier at X-band for membranes made of 2-year-old bovine cortical and nuclear lens lipids (M. Raguz, J. Widomska, J. Dillon, E.R. Gaillard, W.K. Subczynski, Biochim. Biophys. Acta 1788 (2009) 2380-2388). Results demonstrate that SR EPR at W-band has the potential to be a powerful tool for studying samples of small volume, ～30 nL, compared with the sample volume of ～3 μL at X-band.     

Structural polymorphism of the actin-espin system: a prototypical system of filaments and linkers in stereocilia

We examine the interaction between cytoskeletal F-actin and espin 3A, a prototypical actin bundling protein found in sensory cell microvilli, including ear cell stereocilia. Espin induces twist distortions in F-actin as well as facilitates bundle formation. Mutations in one of the two F-actin binding sites of espin, which have been implicated in deafness, can tune espin-actin interactions and radically transform the system's phase behavior. These results are compared to recent theoretical work on the general phase behavior linker-rod systems.     

Femtosecond two-photon LIF imaging of atomic species using a frequency-quadrupled Ti:sapphire laser

Femtosecond (fs)-duration laser pulses are well suited for two-photon laser-induced-fluorescence (TPLIF) imaging of key atomic species such as H, N, and O in gas-phase reacting flows. Ultrashort pulses enable efficient nonlinear excitation, while reducing interfering photochemical processes. Furthermore, amplified fs lasers enable high-repetition-rate imaging (typically 1–10 kHz) for capturing the dynamics of turbulent flow fields. However, two-dimensional (2D), single-laser-shot fs-TPLIF imaging of the above species is challenging in most practical flow fields because of the limited ultraviolet pulse energy available in commercial optical parametric amplifier (OPA)-based tunable laser sources. In this work, we report the development of an efficient, fs frequency-quadrupling unit [i.e., fourth-harmonic generator (FHG)] with overall conversion efficiency more than six times greater than that of commercial OPA-based systems. The development, characterization, and application of the fs-FHG system for 2D imaging of H atoms in flames are described in detail. The potential application of the same laser system for 2D imaging of N and O atoms is also discussed.     

Knudsen gas provides nanobubble stability

We provide a model for the remarkable stability of surface nanobubbles to bulk dissolution. The key to the solution is that the gas in a nanobubble is of Knudsen type. This leads to the generation of a bulk liquid flow which effectively forces the diffusive gas to remain local. Our model predicts the presence of a vertical water jet immediately above a nanobubble, with an estimated speed of ～3.3 m/s, in good agreement with our experimental atomic force microscopy measurement of ～2.7 m/s. In addition, our model also predicts an upper bound for the size of nanobubbles, which is consistent with the available experimental data.     

Active to sterile neutrino mixing limits from neutral-current interactions in MINOS

Results are reported from a search for active to sterile neutrino oscillations in the MINOS long-baseline experiment, based on the observation of neutral-current neutrino interactions, from an exposure to the NuMI neutrino beam of 7.07×10(20) protons on target. A total of 802 neutral-current event candidates is observed in the Far Detector, compared to an expected number of 754 ± 28(stat) ± 37(syst) for oscillations among three active flavors. The fraction f(s) of disappearing ν(μ) that may transition to ν(s) is found to be less than 22% at the 90% C.L.     

Bjorken flow from an anti-de Sitter space Schwarzschild black hole

We consider a large black hole in asymptotically anti-de Sitter spacetime of arbitrary dimension with a Minkowski boundary. By performing an appropriate slicing as we approach the boundary, we obtain via holographic renormalization a gauge theory fluid obeying Bjorken hydrodynamics in the limit of large longitudinal proper time. The metric we obtain reproduces to leading order the metric recently found as a direct solution of the Einstein equations in five dimensions. Our results are also in agreement with recent exact results in three dimensions.     

Short-time dynamics of partial wetting

When a liquid drop contacts a wettable surface, the liquid spreads over the solid to minimize the total surface energy. The first moments of spreading tend to be rapid. For example, a millimeter-sized water droplet will wet an area having the same diameter as the drop within a millisecond. For perfectly wetting systems, this spreading is inertially dominated. Here we identify that even in the presence of a contact line, the initial wetting is dominated by inertia rather than viscosity. We find that the spreading radius follows a power-law scaling in time where the exponent depends on the equilibrium contact angle. We propose a model, consistent with the experimental results, in which the surface spreading is regulated by the generation of capillary waves.     

Temporary threshold shift in bottlenose dolphins (Tursiops truncatus) exposed to mid-frequency tones

A behavioral response paradigm was used to measure hearing thresholds in bottlenose dolphins before and after exposure to 3 kHz tones with sound exposure levels (SELs) from 100 to 203 dB re 1 microPa2 s. Experiments were conducted in a relatively quiet pool with ambient noise levels below 55 dB re 1 microPa2/Hz at frequencies above 1 kHz. Experiments 1 and 2 featured 1-s exposures with hearing tested at 4.5 and 3 kHz, respectively. Experiment 3 featured 2-, 4-, and 8-s exposures with hearing tested at 4.5 kHz. For experiment 2, there were no significant differences between control and exposure sessions. For experiments 1 and 3, exposures with SEL=197 dB re 1 microPa2 s and SEL > or = 195 dB re 1 microPa2 s, respectively, resulted in significantly higher TTS4 than control sessions. For experiment 3 at SEL= 195 dB re 1 microPa2 s, the mean TTS4 was 2.8 dB. These data are consistent with prior studies of TTS in dolphins exposed to pure tones and octave band noise and suggest that a SEL of 195 dB re 1 microPa2 s is a reasonable threshold for the onset of TTS in dolphins and white whales exposed to midfrequency tones.