Sensitive and high-throughput analyses of purine metabolites by dynamic pH junction multiplexed capillary electrophoresis: a new tool for metabolomic studies.

On-line sample preconcentration by a dynamic pH junction in conjunction with multiplexed capillary electrophoresis (CE) and UV detection represents a sensitive and high-throughput format for future metabolomic research, such as purine analysis. The optimization of purine focusing can be rapidly assessed by systematically altering the sample matrix properties, such as the buffer co-ion, pH and ionic strength using a 96-capillary array format. This method permits focusing of large sample injection volumes, resulting in over a 50-fold improvement in the concentration sensitivity. The limit of detection (S/N = 3) for purine metabolites was less than 8.0 x 10(-8) M under optimum conditions when using UV absorbance. Dynamic pH junction multiplexed CE demonstrated excellent linearity over a hundred-fold concentration range, as well as low inter-capillary precision in terms of normalized migration times and peak areas. The potential for clinically relevant high-throughput analyses of micromolar amounts of purine metabolites in urine was also demonstrated.     

An ab initio study of some structural features and the rotational barriers in performic acid,formic acid and hydrogen peroxide

Calculations on performic acid at the 4-31G level, with and without bond functions with complete geometry optimization, and at the (9, 5) level, with and without polarization functions and rigid rotation, all give no sign of a well in the potential energy curve for rotation about the O/O bond axis in the region of 50° – 90° ; and all but the unaugmented 4-31G basis set find the cis-cis planar conformer to be the most stable form. Calculations at the (9,5) level with rigid rotation find the energies of the other planar conformers, relative to the cis-cis conformer, to be 0.94, 1.50 and 14.80 kcal mol^?1 for the trans-trans, cis-trans and trans-cis structures respectively. These energies and also that for the barrier separating the cis-cis and cis-trans conformers, 1–2 kcal mol^?1, are discussed in relation to corresponding data for formic acid, hydrogen peroxide and several planar four heavy-atom molecules. Dipole moment calculations using the same basis sets would seem to favor a skew conformation as the most stable for performic acid, but comparisons between calculated and experimental values for formic acid and for hydrogen peroxide cast doubt on the validity of such results.     

High-sensitivity analyses of metabolites in biological samples by capillary electrophoresis using dynamic pH junction-sweeping

Emerging fields of biochemical research, such as metabolomics, present challenges to current separation technologies because of the large number of metabolites present in a cell and their often low (submicromolar) concentration. Although capillary electrophoresis (CE) holds great promise as the method of choice for high-resolution separations of biological samples, it suffers from poor concentration sensitivity, especially with the use of UV detection. In CE, sweeping and dynamic pH junction represent two complementary on-line focusing techniques that have been used for sensitivity enhancement of hydrophobic and weakly acidic analytes, respectively. However, the application of either the sweeping or dynamic pH junction technique alone might, in some cases, be less effective for the analysis of certain sample mixtures. Recent work in the development of a hyphenated dynamic pH junction-sweeping technique is presented as an effective on-line method of preconcentration suitable for both hydrophilic (anionic) and hydrophobic (neutral) analytes. Sensitive analyses of flavin metabolites by CE with laser-induced fluorescence (LIF) detection is demonstrated in various biological matrixes, including cell extracts of Bacillus subtilis, pooled human plasma, as well as heat-deproteinized flavoenzymes. Enhanced analyte band narrowing and improved sensitivity is achieved for flavins using dynamic pH junction-sweeping compared to either sweeping or dynamic pH junction alone. This results in over a 1200-fold improvement in sensitivity relative to conventional injection methods, giving a limit of detection (LOD, defined as S/N = 3) of about 4.0 x 10(-12) M. Strategies for sensitive and more comprehensive analyses of other cell metabolites, including nucleotides, coenzymes, and steroids, are also discussed when using on-line focusing techniques in conjunction with multiplexed CE and UV detection.     

Synthesis of a μ4-PPh mixed metal cluster: the x-ray structures of [Ru3Rh2(CO)13(PEt3)(μ4-PPh)] and [Ru3Au(μ2-H)(CO)9(PMe2Ph)(μ3-PPh)]

The synthesis of a (μ₄-PPh) and some related (μ₃-PPh) mixed metal clusters containing ruthenium is described together with the X-ray structures of [Ru₃Rh₂(CO)₁₃(PEt₃)(μ₄-PPh)] and [Ru₃Au(μ₂-H)(CO)₉(PMe₂Ph)(μ₃-PPh)].     

Microanalysis of polymers using a windowless energy-dispersive X-ray detector

The surface compositions of various polymeric films, grown electrochemically on platinum foils, have been investigated by energy-dispersive x-ray analysis in conjunction with scanning electron microscopy (SEM/EDS). Comparison of the relative area ratios of peaks for the C and N K_emission lines show that the EDS may be used to study the surface composition of polymers. The evidence presented strongly suggests that there is limited structural degradation and the elemental composition is not changed under the electron beam at relatively low accelerating voltages. This technique statistically samples the repeat units of the polymer. For samples grown in both aqueous and nonaqueous solutions. SEM/EDS provides evidence for extensive contamination with oxygen.     

The synthesis of 1-methyl-1-germaadamantane

The syntheses of 1-methyl-1-germaadamantane and 1-chloro-1-germaadamantane are described. Attempts to prepare the 1-methyl-1-stannaadamantane and the novel cage systems, 1-silatris-nor- and 1-silatris-homo-adamantanes are also described as well as the syntheses of a variety of Group IV 1,3,5-trisubstituted cyclohexanes.     

S-(2-Pyrimidinyl)- and S-(2-(4,6-dimethylpyrimidinyl))-1,1,3,3-tetramethylthiouronium hexafluorophosphates: novel reagents for in situ peptide coupling

Two new reagents for in situ peptide coupling based on the 2-mercaptopyrimidine core have been developed. The readily prepared thiouronium salts were found to promote both peptide and segment coupling efficiently with low racemization/epimerization levels.     

An ab initio study of the geometry,energy, and selected force constants for the three planar conformers of carbonic acid,and the bicarbonate ion; and of the energy for the reaction H2O + CO2 → H2CO3

Ab initio calculations using the unscaled 4-31G basis set have been carried out on the cc, tc, and tt conformers of carbonic acid and the bicarbonate ion, with full geometry optimization assuming the structures to be planar. The complete harmonic force field is reported for the (most stable) tt conformer and for the bicarbonate ion, also selected quadratic force constants for the cc and tc conformers. The changes in certain bond lengths and stretching force constants in the cc → tc, tc → tt, and cc → tt conformer conversion reactions are indicative of intramolecular hydrogen bonding, C?O…H? O and H? O…H? O, which is examined in greater detail by partitioning the overall conformer conversion energy into distortion and bonding energy components. The fundamental vibration frequencies for the tt conformer and the bicarbonate ion are calculated from the force constant matrices, and hence, using a scaling factor based on a comparison of calculated and experimental values for the bicarbonate ion and trans-formic acid, a value is predicted for the zero-point energy of the tt conformer. A new estimate of ΔH? for the hydration reaction, H₂O + CO₂ → H₂CO₃, at 298 K in the gas phase; is made from thermochemical data, +20.2 ± 3.4 kJ mol^?1, which, together with estimates of (H₂₉₈? – H₀?) and the zero-point energy for H₂CO₃, gives +8.1 ± 7.0 kJ mol^?1 for ΔE_T(expt). ΔE_T calculated from the 4-31G basis set data is -29.1 kJ mol^?1. Comparison of the experimental value, the Hartree–Fock limit value, and values calculated with a variety of basis sets for the bond separation reaction, CO₂ + CH₄ → 2H₂CO, suggests that the differences, ΔE_T(expt) minus ΔE_T(SCF ), are due mainly to basis set limitations and not substantial correlation energy contributions.     

Selective chemical treatment of cellular microdomains using multiple laminar streams

There are many experiments in which it would be useful to treat a part of the surface or interior of a cell with a biochemical reagent. It is difficult, however, to achieve subcellular specificity, because small molecules diffuse distances equal to the extent of the cell in seconds. This paper demonstrates experimentally, and analyzes theoretically, the use of multiple laminar fluid streams in microfluidic channels to deliver reagents to, and remove them from, cells with subcellular spatial selectivity. The technique made it possible to label different subpopulations of mitochondria fluorescently, to disrupt selected regions of the cytoskeleton chemically, to dislodge limited areas of cell-substrate adhesions enzymatically, and to observe microcompartmental endocytosis within individual cells. This technique does not require microinjection or immobilization of reagents onto nondiffusive objects; it opens a new window into cell biology.     

Radium-224 in natural waters measured by γ-ray spectrometry

A method based on Ge(Li) γ-ray spectrométry is applied to the determination of ²²⁴Ra (t_{$\text{1}\text{2}$}= 3.64 days) in natural waters. The ²²⁴Ra is first removed from several hundred liters of water by preconcentration onto manganese dioxide-impregnated acrylic fibers. The fibers are leached, radium is coprecipitated with barium sulfate, and the γ-ray activity is counted so that activity ratios among ²²⁴Ra, ²²⁵Ra and ²²⁶Ra can be calculated. Concentrations are determined by using the ²²⁶Ra concentration determined on a small separate sample. Results from samples collected from ground water, estuarine, and continental shelf environments are presented.