An implementation of the exponential time differencing scheme to the magnetohydrodynamic equations in a spherical shell

Over the last decade there has been renewed interest in applying exponential time differencing (ETD) time stepping schemes to the solution of stiff systems. In this paper, we present an implementation of such a scheme to the fully spectral solution of the incompressible magnetohydrodynamic equations in a spherical shell. One problem associated with ETD schemes is the accurate calculation of the necessary matrices; we implement and discuss in detail a variety of different methods including direct computation, contour integration, spectral expansions and recurrence relations. We compare the accuracy of six different second-order methods in determining the evolution of a three-dimensional magnetic field under the action of a prescribed time-dependent flow of electrically conducting fluid, and find that for the timestep restriction imposed by the nonlinear terms, ETD methods are no more accurate than linearly implicit methods which have the significant advantage of being easier to implement. However, ETD methods are more readily extendable than those which are linearly implicit and will become much more advantageous at higher order.     

High-content analysis in preclinical drug discovery

High-Content Analysis (HCA) has developed into an established tool and is used in a wide range of academic laboratories and pharmaceutical research groups. HCA is now routinely proving to be effective in providing functionally relevant results. It is essential to select the appropriate HCA application with regard to the targeted compound's cellular function. The cellular impact and compound specificity as revealed by HCA analysis facilitates reaching definitive conclusions at an early stage in the drug discovery process. This technology therefore has the potential to substantially improve the efficiency of pharmaceutical research. Recent advances in fluorescent probes have significantly boosted the success of HCA. Auto-fluorescent proteins which minimally hinder the functioning of the living cell have been playing a decisive role in cell biology research. For companies the severely restricted license conditions regarding auto-fluorescent proteins hamper their general use in pharmaceutical research. This has opened the field for other solutions such as self-labeling protein technology, which could potentially replace the well established methods that utilize auto-fluorescent proteins. In addition, direct labeling techniques have improved considerably and may supersede many of the approaches based on fusion proteins. Following sample preparation, treated cells are imaged and the resulting multiple fluorescent signals are subjected to contextual and statistical analysis. The extraordinary advantage of HCA is that it enables the large-scale and simultaneous quantification and correlation of multiple phenotypic responses and physiological reactions using sophisticated software solutions that permit assay-specific image analysis. Hence, HCA once more has demonstrated its outstanding potential to significantly support establishing effective pharmaceutical research processes in order to both advance research projects and cut costs.     

Asymmetric allylboration of ketones catalyzed by chiral diols

Chiral BINOL-derived diols catalyze the enantioselective asymmetric allylboration of ketones. The reaction requires 15 mol % of 3,3'-Br2-BINOL as the catalyst and allyldiisopropoxyborane as the nucleophile. The reaction products are obtained in good yields (76-93%) and high enantiomeric ratios (95:5-99.5:0.5). High diastereoselectivities (dr >/= 98:2) and enantioselectivities (er >/= 98:2) are obtained in the reactions of acetophenone with crotyldiisopropoxyboranes.     

An ab initio study of some structural features and the rotational barriers in performic acid,formic acid and hydrogen peroxide

Calculations on performic acid at the 4-31G level, with and without bond functions with complete geometry optimization, and at the (9, 5) level, with and without polarization functions and rigid rotation, all give no sign of a well in the potential energy curve for rotation about the O/O bond axis in the region of 50° – 90° ; and all but the unaugmented 4-31G basis set find the cis-cis planar conformer to be the most stable form. Calculations at the (9,5) level with rigid rotation find the energies of the other planar conformers, relative to the cis-cis conformer, to be 0.94, 1.50 and 14.80 kcal mol^?1 for the trans-trans, cis-trans and trans-cis structures respectively. These energies and also that for the barrier separating the cis-cis and cis-trans conformers, 1–2 kcal mol^?1, are discussed in relation to corresponding data for formic acid, hydrogen peroxide and several planar four heavy-atom molecules. Dipole moment calculations using the same basis sets would seem to favor a skew conformation as the most stable for performic acid, but comparisons between calculated and experimental values for formic acid and for hydrogen peroxide cast doubt on the validity of such results.     

Designing Zn(II) and Cu(II) derivatives as probes for in vitro fluorescence imaging

New M(II) bis(thiosemicarbazonato) complexes (M = Ni(II), Cu(II) and Zn(II)) featuring allyl groups at the exocyclic nitrogens have been synthesised. The complexes were characterised in solution by spectroscopic methods and their solid state structures determined by single crystal X-ray diffraction using synchrotron radiation. The Zn(II) complex was found to be intrinsically fluorescent and soluble in biocompatible media. The uptake of this Zn(II) complex in HeLa, MCF-7 and IGROV cancer cells was monitored by fluorescence microscopies (epi- and confocal fluorescence imaging). The radiolabelling to (64)Cu(II) bis(thiosemicarbazonato) complex was performed cleanly by transmetallation from the corresponding Zn(II) species using (64)Cu(OAc)(2).     

Synthesis and reactivity of dimeric Ar'TlTlAr' and trimeric (Ar"T1)3 (Ar', Ar" = bulky terphenyl group) thallium(I) derivatives: Tl(I)-Tl(I) bonding in species ligated by monodentate ligands

The synthesis and characterization of three new organothallium(I) compounds are reported. Reaction of (Ar'Li)(2) (Ar' = C(6)H(3)-2,6-(C(6)H(3)-2,6-Pr(i)(2))(2)) and Ar"Li (Ar" = C(6)H(3)-2,6-(C(6)H(3)-2,6-Me(2))(2)) with TlCl in Et(2)O afforded (Ar'Tl)(2) (1) and (Ar' 'Tl)(3) (2). The "dithallene" 1 is the heaviest group 13 dimetallene and features a planar, trans-bent structure with Ar'Tl-Tl = 119.74(14) degrees and Tl-Tl = 3.0936(8) A. Compound 2 is the first structurally characterized neutral, three-membered ring species of formula c-(MR)(3) (M = Al-Tl; R = organo group). The Tl(3) ring has Tl-Tl distances in the range ca. 3.21-3.37 A as well as pyramidal Tl geometries. The Tl-Tl bonds in 1 and 2 are outside the range (2.88-2.97 A) of Tl-Tl single bonds in R(2)TlTlR(2) compounds. The weak Tl-Tl bonding in 1 and 2 leads to their dissociation into Ar'Tl and Ar' 'Tl monomers in hexane. The Ar'Tl monomer behaves as a Lewis base and readily forms a 1:1 donor-acceptor complex with B(C(6)F(5))(3) to give Ar'TlB(C(6)F(5))(3), 3. Adduct 3 features an almost linear thallium C(ipso)-Tl-B angle of 174.358(7) degrees and a Tl-B distance of 2.311(2) A, which indicates strong association. Treatment of 1 with a variety of reagents resulted in no reactions. The lower reactivity of 1 is in accord with the reluctance of Tl(I) to undergo oxidation to Tl(III) due to the unreactive character of the 6s(2) electrons.     

The use of 90°-1,3-butadiene as a reference structure for the evaluation of stabilization energies for benzene and other conjugated cyclic hydrocarbons

Reactions are described that employ 90°-1,3-butadiene as a reference structure for the evaluation of the stabilization energyof the benzenoid and other cyclic conjugated hydrocarbons. The unique benefits of this rotamer of butadiene as a reference molecule within the homodesmotic conceptual framework are discussed. Experimental stabilization energies are presented for a number of cyclic hydrocarbons.     

Polarographic reduction of pyridinium ion in pyridine tetraethylammonium perchlorate as background electrolyte

Tetraethylammonium perchlorate, compared to lithium perchlorate as background electrolyte for the reduction of pyridinium ion in pyridine, is effective over a wider potential range, but is more difficult to obtain in a pure state; slight amounts of impurities do not, however, affect the pyridinium wave. The pyridinium wave produced in 0.1 M Et₄NClO₄ may occur at a more negative potential than the main pyridinium wave in 0.1 M LiClO₄, depending on the source of the pyridinium ion, but still appears to be due to a diffusion-controlled reduction, whose limiting current is linearly proportional to concentration; the prewave observed in LiCl0₄ background generally does not appear in Et₄NClO₄ background. Specific differences in the effect of Li(I), Na(I) and Et₄N(I) background cation appear to be due to electrocapillary phenomena and perhaps to the extent of solvation of the ions. The constancy of current for solutions containing acetic acid with added acetate, pyridinium nitrate with added nitrate, and benzoic acid with added benzoate indicate that the pyridinium reduction is independent of anion concentration.     

The preparation of multimetallic complexes using sterically bulky N-centred tripodal dialkyl phosphino ligands

Sterically bulky monodentate and bidentate phosphines have been widely used as ligands for metal complexation and catalyst formation. Bulky tridentate phosphine ligands are however much rarer and have not been widely investigated even though they may be considered attractive ligands for coordination chemistry studies and catalysis. Here we report the synthesis of two new N-centred tripodal phosphine ligands bearing bulky cyclohexyl and tert-butyl groups. The coordination chemistry of the cyclohexyl triphosphine ligand N(CH₂PCy₂)₃ (4) was investigated and found to react with Mo and W hexacarbonyls preferentially forming bidentate metal tetracarbonyl complexes [Mo(CO)₄{N(CH₂PCy₂)₃-κ²P}] (6) and [W(CO)₄{N(CH₂PCy₂)₃-κ²P}] (7) over the expected facial capping tridentate complexes. The steric bulk of the cyclohexyl groups on the phosphorus atoms is sufficient to prevent the third arm of the ligand from coordinating and adopting the required geometry for facial coordination. This ‘steric control’ at the metal centre results in the third arm remaining freely available for further metal coordination. The coordination chemistry of this free phosphine arm on complexes 6 and 7 was investigated further and used to prepare a series of gold, platinum and silver multimetallic complexes. The X-ray crystal structures of the resulting mixed bi and trimetallic complexes [W(CO)₄{N(CH₂PCy₂)₃-κ²P}AuCl] (8), [[Mo(CO)₄{N(CH₂PCy₂)₃-κ²P}]₂(μ-PtCl₂)] (9) and [[W(CO)₄{N(CH₂PCy₂)₃-κ²P}]₂(μ-Ag)]ClO₄ (11) are reported.     

Quantification of oxygenated volatile organic compounds in seawater by membrane inlet-proton transfer reaction/mass spectrometry

The role of the ocean in the cycling of oxygenated volatile organic compounds (OVOCs) remains largely unanswered due to a paucity of datasets. We describe the method development of a membrane inlet-proton transfer reaction/mass spectrometer (MI-PTR/MS) as an efficient method of analysing methanol, acetaldehyde and acetone in seawater. Validation of the technique with water standards shows that the optimised responses are linear and reproducible. Limits of detection are 27 nM for methanol, 0.7 nM for acetaldehyde and 0.3 nM for acetone. Acetone and acetaldehyde concentrations generated by MI-PTR/MS are compared to a second, independent method based on purge and trap-gas chromatography/flame ionisation detection (P&T-GC/FID) and show excellent agreement. Chromatographic separation of isomeric species acetone and propanal permits correction to mass 59 signal generated by the PTR/MS and overcomes a known uncertainty in reporting acetone concentrations via mass spectrometry. A third bioassay technique using radiolabelled acetone further supported the result generated by this method. We present the development and optimisation of the MI-PTR/MS technique as a reliable and convenient tool for analysing seawater samples for these trace gases. We compare this method with other analytical techniques and discuss its potential use in improving the current understanding of the cycling of oceanic OVOCs.