Surface structure and reactivity study of phosphotungstic acid-nitrogenated ormosils

Supramolecular interactions between nitrogenated groups in hybrid ormosils bearing phosphotungstate nanocatalyst were used to tune the photocatalytical activity of these class-II hybrid materials obtained through sol–gel chemistry. Surface chemistry and morphology of the materials was studied by scanning electron microscopy, atomic force microscopy, X-ray photoelectron spectroscopy and water contact angle measurements. The photocatalytic efficiency of these hybrid films, measured by the degradation of crystal violet over-layer deposited on ormosils films, is higher for ormosils bearing neutral, more polar and less H-bonding nitrile groups than those bearing alkylamine/alkylammonium functionalities, despite the lower W/Si atomic ratio on the surface and lower tungsten percentage of the pure nitrile bearing ormosils. Such higher surface reactivity of the nitrile bearing ormosils is due to weaker interaction with the phosphotungstate and the lower activity of amine bearing ormosils is attributed to the competition among reversible photochromism and photocatalysis pathways in these materials.     

Automatic identification of novel bacteria using Raman spectroscopy and Gaussian processes

Raman spectroscopy is successfully used for the reliable classification of complex biological samples. Much effort concentrates on the accurate prediction of known categories for highly relevant tasks in a wide area of applications such as cancer detection and bacteria recognition. However, the resulting recognition systems cannot always be directly used in practice since unseen samples might not belong to classes present in the training set. Our work aims to tackle this problem of novelty detection using a recently proposed approach based on Gaussian processes. By learning novelty scores for a large bacteria Raman dataset comprising 50 different strains, we analyze the behavior of this method on an independent dataset which includes known as well as unknown categories. Our experiment reveals that non-parametric methods such as Gaussian processes can be successfully applied to the task of finding unknown bacterial strains, leading to encouraging results motivating their further utilization in this area.     

Anion binding by meta ureido-substituted thiacalix[4]arenes

The regioselective nitration of 25,26,27,28-tetrapropoxythiacalix[4]arene (1,3-alternate) led to the formation of mono- and dinitro derivatives bearing NO₂ groups in the meta positions at the same side of the molecule. Their reduction and subsequent condensation with arylisocyanates gave the new types of anion receptors with a so far unknown meta-substitution pattern. In a highly HB-competitive solvent like DMSO, the novel ligands showed good complexation abilities. Moreover, as can be documented by higher complexation constants, achiral receptors 9a, 9b are better preorganized for anion binding than corresponding stereoisomers 10a, 10b. Our results indicate that anion receptors based on meta-substituted thiacalixarenes possess complexation abilities fully comparable with common para-substituted analogues.     

Anthraquinone as a redox label for DNA: synthesis, enzymatic incorporation, and electrochemistry of anthraquinone-modified nucleosides, nucleotides, and DNA

Modified 2'-deoxynucleosides and deoxynucleoside triphosphates (dNTPs) bearing anthraquinone (AQ) attached through an acetylene or propargylcarbamoyl linker at the 5-position of pyrimidine (C) or at the 7-position of 7-deazaadenine were prepared by Sonogashira cross-coupling of halogenated dNTPs with 2-ethynylanthraquinone or 2-(2-propynylcarbamoyl)anthraquinone. Polymerase incorporations of the AQ-labeled dNTPs into DNA by primer extension with KOD XL polymerase have been successfully developed. The electrochemical properties of the AQ-labeled nucleosides, nucleotides, and DNA were studied by cyclic and square-wave voltammetry, which show a distinct reversible couple of peaks around -0.4 V that make the AQ a suitable redox label for DNA.     

Alkylsulfanylphenyl derivatives of cytosine and 7-deazaadenine nucleosides, nucleotides and nucleoside triphosphates: synthesis, polymerase incorporation to DNA and electrochemical study

Aqueous Suzuki–Miyaura cross‐coupling reactions of halogenated nucleosides, nucleotides and nucleoside triphosphates derived from 5‐iodocytosine and 7‐iodo‐7‐deazaadenine with methyl‐, benzyl‐ and tritylsufanylphenylboronic acids gave the corresponding alkylsulfanylphenyl derivatives of nucleosides and nucleotides. The modified nucleoside triphosphates were incorporated into DNA by primer extension by using Vent(exo‐) polymerase. The electrochemical behaviour of the alkylsulfanylphenyl nucleosides indicated formation of compact layers on the electrode. Modified nucleotides and DNA with incorporated benzyl‐ or tritylsulfanylphenyl moieties produced signals in [Co(NH₃)₆]³⁺ ammonium buffer, attributed to the Brdi?ka catalytic response, depending on the negative potential applied. Repeated constant current chronopotentiometric scans in this medium showed increased Brdi?ka catalytic response, which suggests the deprotection of the alkylsulfanyl derivatives to free thiols under the conditions.     

A combined far-infrared spectroscopic and electrochemical approach for the study of iron-sulfur proteins

Herein, we present the development of a far-infrared spectroscopic approach for studying metalloenzyme active sites in a redox-dependent manner. An electrochemical cell with 5 mm path and based on silicon windows was found to be appropriate for the measurement of aqueous solutions down to 200 cm(-1) . The cell was probed with the infrared redox signature of the metal-ligand vibrations of different iron-sulfur proteins. Each Fe-S cluster type was found to show a specific spectral signature. As a common feature, a downshift of the frequency of the Fe-S vibrations was seen upon reduction, in line with the increase of the Fe-S bond. This downshift was found to be fully reversible. Electrochemically induced FTIR difference spectroscopy in the far infrared is now possible, opening new perspectives on the understanding of metalloproteins in function of the redox state.     

Application of thin metal film elements in bioanalysis

Advanced metal deposition and microfabrication techniques enable preparation of metal surfaces with high precision and excellent control over their size and shape with subnanometer resolution. Thin metal films of different types and functions can be found in many analytical instruments. Surfaces with high optical quality serve as mirrors, beam splitters, antireflective coatings etc. Smooth metal coating is crucial in electron microscopy. Unique properties of the thin metal films are widely used in optical systems, as tools for sample manipulation but also for chemical sensing and detection. While some of the applications are widespread and belong to the basic curriculum in analytical chemistry, the newer or less common uses of thin metal films are well known only to the experts in the field. The purpose of this critical review is to highlight the role of thin metal films in bioanalysis and summarize some of their main applications in current bioanalytical instrumentation.     

Raman spectroscopic study of crystallization from solutions containing MgSO4 and Na2SO4: Raman spectra of double salts

Mg(2+), Na(+), and SO(4)(2-) are common ions in natural systems, and they are usually found in water bodies. Precipitation processes have great importance in environmental studies because they may be part of complex natural cycles; natural formation of atmospheric particulate matter is just one case. In this work, Na(2)Mg(SO(4))(2)·5H(2)O (konyaite), Na(6)Mg(SO(4))(4) (vanthoffite), and Na(12)Mg(7)(SO(4))(13)·15H(2)O (loeweite) were synthesized and their Raman spectra reported. By slow vaporization (at 20 °C and relative humidity of 60-70%), crystallization experiments were performed within small droplets (diameter ≤ 1-2 mm) of solutions containing MgSO(4) and Na(2)SO(4), and crystal formations were studied by Raman spectroscopy. Crystallization of Na(2)Mg(SO(4))(2)·4H(2)O (bloedite) was observed, and the formation of salt mixtures was confirmed by Raman spectra. Bloedite, konyaite, and loeweite, as well as Na(2)SO(4) and MgSO(4)·6H(2)O, were the components found to occur in different proportions. No crystallization of Na(6)Mg(SO(4))(4) (vanthoffite) was observed under the crystallization condition used in this study.     

Photo-crosslinked and pH sensitive polymersomes for triggering the loading and release of cargo

Crosslinkable and pH-sensitive amphiphilic block copolymers are promising candidates to establish pH-stable and permeable vesicles for synthetic biology. Here, we report the fabrication of crosslinked and pH-stable polymersomes as swellable vesicles for the pH-dependent loading and release of small dye molecules.