Primary and secondary kinetic isotope effects in E2 elimination reactions

Primary and secondary deuterium kinetic isotope effects have been measured for elimination of LCl (L = H or D) from some substituted 1,2-diaryl-1-chloroethanes. Although changes in these effects are in agreement with theoretical predictions, the high values of (E_H-E_D)_β and the significantly low A_H/A_D may suggest that either proton tunnelling or an internal return mechanism is complicating this E2 elimination.     

Trace metal concentrations in single specimens of the intestinal broad flatworm (Diphyllobothrium latum), compared to their fish host (Oncorhynchus mykiss) measured by total reflection X-ray fluorescence spectrometry

The aim of this study was to investigate (1) whether intestine endoparasites (Diphyllobothrium latum) accumulate trace elements related to its body size and (2) whether parasites bioconcentrate more trace elements than their host. Freshwater fish (rainbow trout Oncorhynchus mykiss) were sampled in the deep, oligotrophic and uncontaminated Lake Riñihue in Southern Chile. The element concentration of different organs (intestine, muscle, liver) and of the intestine endoparasites were analyzed using total reflection X-ray fluorescence spectrometry. The results showed that the mass fraction for Mn, Fe, Ni, Cu, and Pb decreased significantly with the body size (dry weight) of the endoparasite. Only Zn did not reveal such a relationship. Small parasites accumulated up to 80 times more Fe, Ni, Mn, Pb, and Cu than large parasites. Compared to the fish organs, small parasites accumulated in maximum 35 to 307 times more Mn, 5 to 255 times more Fe, 98 to 220 times more Ni, 3 to 175 times more Cu, and 0.4 to 12 times more Zn than the fish. Lead was only found in the endoparasite, but not in the fish organs. We conclude that (1) D. latum is a good indicator for trace element accumulation in fishes and that (2) small endoparasites are more sensitive as bioindicators because they showed higher bioconcentrations of trace metals than larger parasites.     

Time and distance dependence of reversible polymer bridging followed by single-molecule force spectroscopy

Polymer bridging between surfaces plays an important role in a range of fundamental processes in the material and life sciences. Bridges formed by main-chain reversible polymers differ from their covalent analogs in that they can dynamically adjust their size and shape in response to external stimuli and have the potential to reform following bond scission. In this work, the time and distance dependence of main-chain reversible polymer bridge formation are studied using an atomic force microscope. The bridging process was studied using single-molecule force spectroscopy, and its dependence on the distance between surfaces and equilibration time was probed. The number of bridges formed decreases as the gap width increases, from approximately 2 bridges per 14 s equilibration at separations of 5-15 nm to approximately 0.5 bridges per 14 s equilibration at separations of 35-45 nm. The kinetics of bridge formation appear to be slightly faster at smaller separations.     

Theoretical study of the surface reactivity of alkaline earth oxides: local density of states evaluation of the local softness

The local softness of MgO, CaO, SrO, and BaO (100) surfaces has been studied using a model based on the local density of states. In all the species, the local softness (chemical reactivity) of oxygen atoms at the surface is enhanced as compared to the bulk. The results for the local and the global softness are in agreement with the ionic pattern of the metal-oxygen bond of the series.     

QTAIM and stress tensor interpretation of the (H2O)5 potential energy surface

Using the quantum theory of atoms in molecules a near complete combined directed spanning quantum topology phase diagram (QTPD) was constructed from the nine (H₂O)₅ reaction‐pathways and five unique Poincaré–Hopf solutions that were found after an extensive search of the MP2 potential energy surface. Two new energy minima that were predicted from earlier work are found and include the first (H₂O)₅ conformer with a 3‐D_QT quantum topology. The stress tensor Poincaré–Hopf relation indicated a preference for 2‐D_QT (H₂O)₅ topologies as well as the presence of coupling between shared‐shell O? H BCPs to the hydrogen‐bond BCPs that share an H NCP. The complexity of the near complete combined QTPD was explained in terms of the O…O bonding interactions that were found in six of the nine (H₂O)₅ reaction‐pathways and for all points of the combined QTPD. The stabilizing role of the O…O bonding interactions from the values of the total local energy density was explored. © 2016 Wiley Periodicals, Inc.     

Mechanistic studies on 14-electron ruthenacyclobutanes: degenerate exchange with free ethylene

The phosphonium alkylidene [(NHC)Cl2Ru=CH(PCy3)]+[B(C6F5)4]-, 1, (NHC = N-heterocyclic carbene, Cy = cyclohexyl, C6H11) reacts with 2.2 equiv of ethylene at -50 degrees C to form the 14-electron ruthenacyclobutane (NHC)Cl2Ru(CH2CH2CH2), 2. NMR spectroscopic data indicates that 2 has a C2v symmetric structure with a flat, kite shaped ruthenacyclobutane ring with significant Calpha-Cbeta agostic interactions with the Ru center. Intramolecular exchange of Calpha and Cbeta is fast (14(2) s-1 at 223 K) as measured by EXSY spectroscopy. Intermolecular exchange of Calpha and Cbeta with the methylene groups of free ethylene is much slower and first order in both [Ru] and [H2C=CH2] (4.8(3) x 10-4 M-1 s-1). Activation parameters for this process are DeltaH++ = 13.2(5) kcal mol-1 and DeltaS++ = -15(2) cal mol-1 K-1, also consistent with a rate limiting associative substitution as the key step in this exchange process. On the basis of this observation, mechanisms for the intermolecular exchange process are proposed and the implications for the mechanism of the propagation steps in catalytic olefin metathesis as mediated by Grubbs catalysts are discussed.     

Dinuclear platinum complexes with biological relevance based on the 1,2-diaminocyclohexane carrier ligand

The synthesis of bifunctional dinuclear platinum complexes, [{PtCl(dach)}(2)-mu-Y](n+)Cl(n) (1-3; Y = H(2)N(CH(2))(3)NH(2)(CH(2))(4)NH(2), H(2)N(CH(2))(6)NH(2)(CH(2))(6)NH(2), and H(2)N(CH(2))(6)NH(2)(CH(2))(2)NH(2)(CH(2))(6)NH(2), respectively; Figure 1) is reported. There was no labilization of the polyamine linker groups of the cis-1,2-diaminocyclohexane complexes in the presence of sulfur-containing species at physiological pH, in contrast to previous studies preformed on trans complexes. Metabolism reactions are somewhat dependent on the nature of the polyamine: at physiological pH, the spermidine complex 1 forms an inert (tetraamine)platinum species in which one platinum is chelated by a central and terminal amino group. The stability of cis-geometry complexes may make them viable second-generation polynuclear platinum clinical candidates.     

From molecular to continuum modelling of bistable liquid crystal devices

We study nematic equilibria on a square with tangent Dirichlet conditions on the edges, in three different modelling frameworks: (i) the off-lattice Hard Gaussian Overlap and Gay–Berne models; (ii) the lattice-based Lebwohl–Lasher model; and the (iii) two-dimensional Landau-de Gennes model. We compare the modelling predictions, identify regimes of agreement and in the Landau-de Gennes case, find up to 21 different equilibria. Of these, two are physically stable.     

Control of properties of nanocomposites bio-based collagen and cellulose nanocrystals

Collagen is an important biomaterial because it has many applications in the biomedical sector. However, the high hydrophilicity of collagen (COL) leads to easy swelling. Thus, controlling this property is highly desirable. In this work, cellulose nanocrystals (CNCs) dispersed in glycerol (GLI) were incorporated in the matrix collagen to tailor the hydrophilicity and mechanical properties. Study of the hydrophilicity of the bio-based nanocomposite was evaluated by contact angle measurement and thermogravimetric analysis. Mechanical analyses showed that CNCs are excellent reinforcing fillers to the collagen matrix. Synchrotron small-angle X-ray scattering was employed to investigate the nanostructures of COL/GLI/CNC nanocomposites and CNC water dispersion. CNC in concentrations up to 1 wt% presents an intermediate shape between a rod and a plane with a 9.34-nm radius of gyration (R _g). Bio-based nanocomposites present two different structural levels with two types of particles with very different R _gs. At the intermediate power-law regime, a large-scale mass fractal aggregate is observed. In the high-power-law regime, it is observed scattering from primary particles smaller than 1 nm. As the CNC concentration increases, the original particle distorts from a rod to a plate. The cytotoxicity assay indicates that the collagen and nanocomposites did not affect the cell viability of rat calvarial cells in vitro.