Vibrational analysis of x-ray absorption fine structure thermal factors by ab initio molecular dynamics: the Zn(II) ion in aqueous solution as a case study

In this work, we consider a new combination of vibrational analysis and normal-like mode decomposition of Debye-Waller factors of solvated ions entirely based on molecular dynamics data. Such a novel time-dependent analysis procedure provides a direct link between x-ray absorption fine structure parameters and normal mode contributions for an ion-solvent system. The potentialities of such a methodology rely on two fundamental aspects which distinguish it from already available tools. First, a general vibrational analysis that does not require any Gaussian or harmonic model for describing atomic fluctuations in liquids. Second, a very accurate sampling of the short range motions around the structural probe via the recently developed atom centered density matrix propagation/general liquid optimized boundary method. This novel molecular dynamics methodology is based on an integrated ab initio/classical potential using localized basis functions and nonperiodic boundary conditions. As a case study we have chosen the Zn(II) ion in aqueous solution. The consistency of our results and the observed good agreement with experiments show how the key support to advanced structural techniques from molecular dynamics can be further expanded and investigated.     

Effect of cyclodextrins on the physicochemical properties of chlorophyll a in aqueous solution

The interactions between chlorophyll a and two beta-cyclodextrins, that have the same cavity size but different substituents, were studied in aqueous solutions. These supramolecular host-guest complexes were examined by a combination of UV/vis absorption, circular dichroism, NMR, and steady-state and time-resolved fluorescence measurements. The results indicate that all cyclodextrins solubilize the pigment mainly in monomeric form in water. The pigment forms 1:1 complexes with the heptakis(2,3,6-tri-O-methyl)-beta-cyclodextrin and 1:2 complexes with the hydroxypropyl-beta-cyclodextrin. In such complexes the methyl groups of the cyclodextrin inner cavity are involved in the interaction with the pigment as evidenced by NMR measurements. We also measured the luminescence of singlet oxygen photosensitized by chlorophyll a in the inclusion complexes.     

Redox-active dirhodium(II,II) species covalently entrapped into a methylmethacrylate backbone

A novel class of polymers was obtained by insertion of dirhodium(II,II) metal systems into a methacrylate backbone; the synthesis was realized by free radical polymerization of an appropriate methacrylate-functionalized dirhodium polymer precursor, namely [Rh2(form)2(MA-COO)2](form =N,N'-di-p-tolylformamidinate)(MA-COO = 2-(methacroyloxy)ethyl-phthalate), with methylmethacrylate (MMA); the new copolymers, in solution, show reversible CO-absorption, connected to the axial reactivity of dirhodium(II,II) species.     

Synthesis and reactivity of formamidinato rhodium(I) complexes

The syntheses of [Rh(diol)(formamidine)]₂ complexes (diol  cycloocta-1,5-diene (1); diol  norbornadiene (2); formamidine  N,N′-di-p-tolylformamidine) are reported. These complexes are dimeric and contain the bridging formamidino ligand. They react with CO, dppe and PPh₃ with displacement of the diene ligand to yield the known [Rh(CO)₂(formamidine)]₂, [Rh(dppe)₂]⁺ and [Rh(PPh₃)₂(formamidine)], respectively; the last complex, in which the formamidine acts as a chelating ligand, was isolated only as the O₂ adduct. With HCl or HBF₄ aqueous 1 and 2 do not form hydrides but instead the formamidino cation [p-tolyl-NHCHNHtolyl-p]⁺ and the complexes [Rh(diol)X]₂ (X  Cl, F); a possible scheme for the reaction with HCl is proposed. The [Rh(C₈H₁₂)(formamidine)]₂ complex reacts with heterocumulenes as CS₂, SO₂, PhNCS and PhNCO with diene displacement; the only product isolated was [Rh(CS₂)₂(formamidine], to which a polymeric structure is assigned.