Non-quadratic-intensity dependence of two-photon absorption induced fluorescence of organic chromophores in solution

We have provided a model to interpret the non-quadratic-intensity dependence behavior commonly observed in the two-photon fluorescence (TPF) experiment excited with high laser intensity. The model also provides one with a different technique to measure the two-photon absorption cross section of an organic chromophore in solution. In contrast to the commonly used low intensity technique that depends on the quadratic-intensity law, the present technique is based on the non-quadratic-intensity dependence of two-photon fluorescence. Auxiliary data such as two-photon quantum efficiency and fluorescence collection efficiency, essential in the low intensity method, are not required in the present technique. TPF measurements of Rhodamine B in methanol are carried out to demonstrate the validity of the present method. The method is used to determine the two-photon absorption cross section of a new chromophore attached with tricyano-derivatized furan as the electron acceptor. The two-photon absorption cross section measured using this method is also compared with that using a conventional transmission technique.     

The electrooxidation of methanol and related compounds at ruthenium dioxide-coated electrodes

The underlying metal was observed to corrode when a ruthenium dioxide-coated titanium electrode was anodized in an aqueous methanol solution. With a similarly coated platinum electrode peaks were observed on the voltammogram below 1.0 V which were attributed to methanol oxidation on the underlying metal. This effect was more pronounced when the electrode was subjected during cycling to potentials close to 0 V. Rapid oxidation of methanol on RuO₂ was observed at potentials above 1.0 V, the rate at a given potential increasing in an approximately linear manner with increasing alcohol concentration. The rate of reaction also increased with increasing temperature and increasing surface roughness. Tafel slope values were rather high (>100 mV decade^?1) and a mechanism involving anodically generated species such as OH_ads was proposed to account for these results. The variation of activity with pH was similar to that reported earlier for oxygen evolution at these anodes and this was again explained in terms of partial deactivation of the surface due to a combination of proton loss and phosphate ion adsorption at intermediate pH values. The release of carbon dioxide from aqueous solutions of higher alcohols at 25°C confirmed the high oxidizing power of RuO₂ anodes.     

Cyclic Heptapeptides Axinastatin 2, 3, and 4: Conformational analysis and evaluation of the biological potential

The conformational analysis of naturally occurring cytostatic cyclic heptapeptides axinastatin 2, 3, and 4 was carried out by two-dimensional NMR spectroscopy in combination with distance-geometry (DG) and molecular-dynamics (MD) calculations in explicit solvents. The synthesized secondary metabolites were examined in (D₆)DMSO. Axinastatin 2 was also investigated in CD₃OH. In all structures, Pro² is in the i + 1 position of a βI turn and Pro⁶ occupies the i + 2 position of a βVIa turn about the cis amide bond between residue 5 and Pro^6. In all peptides, a bifurcated H-bond occurs between residue 4 CO and the amide protons of residue 1 and 7. For axinastatin 2 and 3, an Asn I_g turn was found about Asn¹ and Pro^2. We compared these structures with conformations of cyclic heptapeptides obtained by X-ray and NMR studies. A β-bulge motif with two β turns and one bifurcated H-bond is found as the dominating backbone conformation of cyclic all-L-heptapeptides. Axinastatin 2, 3, and 4 can be characterized by six trans and one cis amide bond resulting in a β/βVI(a)-turn motif, a conformation found for many cyclic heptapeptides. Detailed biological tests of the synthetic compounds in different human cancer cell lines indicates these axinastatins to be inactive or of low activity.     

A versatile toolbox for variable DNA functionalization at high density

To broaden the applicability of chemically modified DNAs in nano- and biotechnology, material science, sensor development, and molecular recognition, strategies are required for introducing a large variety of different modifications into the same nucleic acid sequence at once. Here, we investigate the scope and limits for obtaining functionalized dsDNA by primer extension and PCR, using a broad variety of chemically modified deoxynucleotide triphosphates (dNTPs), DNA polymerases, and templates. All natural nucleobases in each strand were substituted with up to four different base-modified analogues. We studied the sequence dependence of enzymatic amplification to yield high-density functionalized DNA (fDNA) from modified dNTPs, and of fDNA templates, and found that GC-rich sequences are amplified with decreased efficiency as compared to AT-rich ones. There is also a strong dependence on the polymerase used. While family A polymerases generally performed poorly on "demanding" templates containing consecutive stretches of a particular base, family B polymerases were better suited for this purpose, in particular Pwo and Vent (exo-) DNA polymerase. A systematic analysis of fDNAs modified at increasing densities by CD spectroscopy revealed that single modified bases do not alter the overall B-type DNA structure, regardless of their chemical nature. A density of three modified bases induces conformational changes in the double helix, reflected by an inversion of the CD spectra. Our study provides a basis for establishing a generally applicable toolbox of enzymes, templates, and monomers for generating high-density functionalized DNAs for a broad range of applications.     

Synthese,Kristallstruktur und festkörper‐NMR‐spektroskopische Untersuchung neuer Oxonitridosilicate der Mischkristallreihe Ba4−xCaxSi6N10O

The new oxonitridosilicates Ba_4?xCa_xSi₆N₁₀O have been synthesized by means of high‐temperature synthesis in a radio‐frequency furnace, starting from calcium, barium, silicon diimide and amorphous silicon dioxide. The maximum reaction temperature was at about 1450 °C. The solid solution series Ba_4?xCa_xSi₆N₁₀O with a phase width 1.81 ≤ x ≤ 2.95 was obtained. The crystal structure of Ba_1.8Ca_2.2Si₆N₁₀O was determined by X‐ray single‐crystal structure determination (P2₁3, no. 198), a = 1040.2(1) pm, Z = 4, wR2 = 0.082). It can be described as a highly condensed network of corner‐sharing SiN₄ and SiON₃ tetrahedra, the voids of which are occupied by the alkaline earth ions. The structure is isotypic with that of BaEu(Ba_0.5Eu_0.5)YbSi₆N₁₁. In the ²⁹Si solid‐state MAS‐NMR spectrum two isotropic resonances at ?50.0 and ?53.6 ppm were observed.     

Biosynthetic Production of [N2,1,3,7,9-15N]Guanosine and [1,3,7,9-15N]inosine and conversion into [N6,1,3,7,9-15N]adenosine for structure elucidation of RNA by heteronuclear NMR

A procedure was developed for the biosynthetic preparation of ¹⁵N-labelled guanosine and inosine through the action of a mutant Bacillus subtilis strain. Crude [N²,1,3,7,9-¹⁵N]guanosine and [1,3,7,9-¹⁵N]inosine were isolated from the culture filtrate by precipitation and anion-exchange chromatography (Scheme 1). No cell lysis and no enzymatic degradation was necessary. The per-isobutyrylated derivatives 1 and 2 were isolated from a complex mixture, purified by virtue of their different lipophilicity, and separated in three steps involving normal-and reversed-phase silica-gel chromatography. One litre of complex nutrient medium yielded 8.44 mmol of guanosine derivative and 2.84 mmol of inosine derivative with high average ¹⁵N enrichment (83.5 and 91.9 atom-%, resp.). [N⁶,1,3,7,9-¹⁵N]Adenosine ( 4 ) was obtained from 2′,3′,5′-tri-O-isobutyryl[1,3,7,9-¹⁵N]inosine ( 1 ) through the ammonolysis of its 1,2,4-triazolyl derivative with aqueous ¹⁵NH₃ (Scheme 2).     

Gewöhnliche lineare Differentialgleichungen zweiter Ordnung mit Distributionskoeffizient

Zusammenfassung Läßt man in der gew. lin. Dgl. zweiter Ordnung einen Distributionskoeffizient zu, der Ableitung einerL _loc ² -Funktion ist, so existieren eindeutig festlegbare, stetige Lösungen derart, daß die in der Dgl. auftretenden Produkte definiert werden können. Mit einer Regularisierung des Distr.-Koeffizienten können die Lösungen durchC -Funktionen approximiert werden. Es wird der Sturmsche Vergleichssatz verallgemeinert. Hieraus und aus den Eigenschaften der mit zwei Basislösungen gebildeten Lösungskurve folgt die Gültigkeit des Ljapunovschen Satzes über die Eigenwertverteilung der verallgemeinerten Hillschen Dgl. mit positivem Distr.-Koeffizient, falls eine zusätzliche Bedingung erfüllt ist. Die vorliegende Arbeit enthält einige Ergebnisse meiner Dissertation [6] (weitere Resultate und Details finden sich dort).     

Stable Methods for Evaluating the Points cos(i{pi}/n)

A variety of alternative methods for evaluating cos(i/n) fori= 0, 1,...,n are compared theoretically and experimentally,and the best ones selected on the basis of accuracy and thecomputational efficiency. The error analysis involved demonstrateshow certain mathematically equivalent recurence relations canexhibit very different computational behaviour.     

Structure and cooperativity of the hydrogen bonds in sodium dihydrogen triacetate

Geometry and energetics of low energy conformers of sodium dihydrogen triacetate (SDHTA) and its anion are studied using density functional theory (DFT) at the Becke, Lee‐Yang‐Parr hybrid functional (BLYP) and Becke, three‐parameter, Lee‐Yang‐Parr hybrid functional (B3LYP) levels. For both cases, two structures of comparable energy are found, which have different symmetry with respect to the two hydrogen bonds (HBs). DFT‐based Born–Oppenheimer molecular dynamics simulations are performed for SDHTA, which show that both structures are visited at room temperature conditions. The trajectory analysis further reveals that the two HBs behave anticooperative, that is, on average elongation of one HB is accompanied by a compression of the other one. This is in accord with nuclear magnetic resonance (NMR) experimental studies for a similar counter ion–dihydrogen triacetate complex. © 2012 Wiley Periodicals, Inc.