Atomic force microscope studies on the interactions of Candida rugosa lipase and supported lipidic bilayers

Using the Langmuir–Blodgett technique we prepared substrate supported well-defined lipid/phospholipid (1-mono-palmitoyl-rac-glycerol (MPG)/l,2-dipalmitoyl-sn-glycerol-3-phosphocholine (DPPC)) bilayers in which the MPG lipid leaflet was exposed to the aqueous phase. Hydrolysis of MPG performed by Candida rugosa lipase (CRL) on the upper MPG layer of these supported bilayers on mica was imaged by real time atomic force microscope (AFM) using a liquid cell, so that the area increase of the initial structural defects could be followed over time. Our data strongly suggest that the edges of the initial structural defects are the preferred activation sites for CRL once the enzyme is adsorbed onto these interfaces. When a 2.5 nM bulk concentration of CRL was assayed on this planar lipid substrate, we found a long lag phase before a sharp increase of catalytic activity. The lag–burst kinetic behaviour was related to the interfacial activation phenomenon although we propose that it is also dependent on the gel-phase state of this interface.     

Easy Access to Phosphine-Borane Building Blocks

In this paper, we highlight the synthesis of a variety of primary phosphine-boranes (RPH₂⋅BH₃) from the corresponding dichlorophosphines, simply by using Li[BH₄] as reductant and provider of the BH₃ protecting group. The method offers facile access not only to alkyl- and arylphosphine-boranes, but also to aminophosphine-boranes (R₂NPH₂⋅BH₃) that are convenient building blocks but without the protecting BH₃ moiety thermally labile and notoriously difficult to handle. The borane-protected primary phosphines can be doubly deprotonated using n-butyllithium to provide soluble phosphanediides Li₂[RP⋅BH₃] of which the phenyl-derivative Li₂[PhP⋅BH₃] was structurally characterized in the solid state.     

An Application of Capillary Electrophoresis for the Analysis of Algal Toxins from the Aquatic Environment

In this work capillary electrophoresis (CE) with UV detection has been applied to the analysis of different natural toxins produced in the aquatic environment. This technique is presented as an alternative to other chemical techniques such as HPLC, and the optimisation of analytical methodologies was carried out for diverse marine toxins including Paralytic and Amnesic and some polyether toxins, such as Yessotoxins, as well as for certain microcystin toxins produced by cyanobacteria present in freshwaters. Sample preparation steps were optimised and adequate electrophoretic conditions developed for achieving a complete separation of compounds with similar structures involved in such contamination. The influence of the biological matrices where they are involved has also been studied and the potential use of CE-UV as a tool for monitoring these aquatic toxins is also discussed.     

Evaluation of Extraction Procedures of Organochlorine Pesticides from Natural Waters and Sediments

Abstract

This study aims to evaluate different procedures for the extraction of organochlorine pesticides (OCP's) from natural waters and sediments. In the case of extraction from water, a C18 disk solid-phase extraction method was employed. Recovery experiments in the range of 40 to 200 ng/l with selected organochlorine compounds resulted in average recoveries between 80 and 100%. Four different solvents, hexane, ethyl acetate, acetonitrile and methanol, were tested as eluting agents. Best recoveries were obtained with ethyl acetate and hexane. A comparative study of OCP sediment extraction procedures was performed employing sonication, Soxhlet extraction and shake-flask methods. The capacity of these methods to recover OCP's from a sediment sample fortified at 50 ng/g was evaluated using hexane : acetone (1:1 v/v), hexane: acetone (8:2 v/v), acetonitrile and dichlorometane. The three extraction techniques gave similar results and dichloromethane was the most effective solvent. The optimised methods were applied in the analysis of waters and sediments from the “Aiguamolls de l'Empordà” Nature Park, Girona (Spain).     

Comparative study of the mechanical relaxation behavior of polymethacrylates containing different bulky side groups

The syntheses of poly(1,3‐dioxan‐5‐yl methacrylate), poly(cis‐2‐phenyl‐1,3‐dioxan‐5‐yl methacrylate), poly(trans‐2‐phenyl‐1,3‐dioxan‐5‐yl methacrylate), poly(cis‐2‐cyclohexyl‐1,3‐dioxan‐5‐yl methacrylate), and poly(trans‐2‐cyclohexyl‐1,3‐dioxan‐5‐yl methacrylate) are reported. The mechanical relaxation spectrum of the simplest polymer, poly(1,3‐dioxan‐5‐yl methacrylate), exhibits a prominent β relaxation centered at ?98 °C, at 1 Hz, followed in increasing order of temperature by an ostensible glass–rubber relaxation process. In addition to the β relaxation, the loss curves of poly(trans‐2‐phenyl‐1,3‐dioxan‐5‐yl methacrylate) and poly(trans‐2‐cyclohexyl‐1,3‐dioxan‐5‐yl methacrylate) display in the glassy state a high activation energy relaxation, named the β* process, that seems to be a precursor of the glass–rubber relaxation of these polymers. The mechanical spectra of poly(trans‐2‐cyclohexyl‐1,3‐dioxan‐5‐yl methacrylate) and poly(cis‐2‐cyclohexyl‐1,3‐dioxan‐5‐yl methacrylate) exhibit a low activation energy process in the low‐temperature side of the spectra, which is absent in the other polymers. The molecular origin of the mechanical activity of these polymers in the glassy state is discussed in qualitative terms. © 2002 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 40: 1154–1162, 2002     

Dissimilar interaction of CB1/CB2 with lipid bilayers as revealed by molecular dynamics simulation

Cannabinoid receptors CB1 and CB2 are a striking class of transmembrane proteins involved in a high number of important biological processes. In spite of the inherent similarity (40% in aminoacid sequence) these receptors are found in different cell environments. In addition to this, CB1 activity has been intimately associated with lipid rafts whereas CB2 has not. In this work we have performed a 50 nanosecond molecular dynamics simulation of the inactive conformations of both receptors inserted in a POPC lipid bilayer. Although in both cases the overall protein structure is maintained along the entire simulation we have found important differences in the protein-lipid interaction. While CB1 tends to distort the lipid bilayer regularity, especially in the extracellular moiety, CB2 has a minor influence on the lipid distribution along the plane of the bilayer. This observation is consistent with some experimental facts observed in these cannabinoid receptors with regard to lipid/protein interaction.     

The optimal combination: Grammatical swarm,particle swarm optimization and neural networks

Social behaviour is mainly based on swarm colonies, in which each individual shares its knowledge about the environment with other individuals to get optimal solutions. Such co-operative model differs from competitive models in the way that individuals die and are born by combining information of alive ones. This paper presents the particle swarm optimization with differential evolution algorithm in order to train a neural network instead the classic back propagation algorithm. The performance of a neural network for particular problems is critically dependant on the choice of the processing elements, the net architecture and the learning algorithm. This work is focused in the development of methods for the evolutionary design of artificial neural networks. This paper focuses in optimizing the topology and structure of connectivity for these networks.