Expression of the DNA Repair Enzyme, Photolyase, in Developmental Tissues and Larvae, and in Response to Ambient UV-R in the Antarctic Sea Urchin Sterechinus neumayeri

Gene expression of the DNA repair enzyme, photolyase (E.C. 4.1.99.3) was examined in the gonads, eggs, embryos and larval stages of the Antarctic sea urchin, Sterechinus neumayeri . Partial sequencing of the gene revealed two highly conserved regions, including a 300 bp region representing the binding site for the cofactor flavin adenine dinucleotide. The second 1200 bp region, likely representing a second light-harvesting cofactor binding site, was identified in a second sea urchin species, Strongylocentrotus frascicanus . Probes for photolyase were developed from the shorter sequence, and expression in sea urchin developmental tissue and stages, and in response to in situ exposure to ultraviolet radiation was quantified using PCR and RT-qPCR, with concentrations of photolyase normalized to actin concentrations. Photolyase was expressed in all tissues and developmental stages examined. In controlled field-based experiments in McMurdo Sound, Antarctica, we found evidence of both constitutive expression of photolyase and induction in response to in situ exposure of embryos to UV-R. Induction of photolyase was observed in response to greater ambient UV-R (such as shallower water depths or sea ice-free regions).     

Seaweed to dendrite transition in directional solidification

We simulate directional solidification using a phase-field model solved with adaptive mesh refinement. For small surface tension anisotropy directed at 45 degrees relative to the pulling direction we observe a crossover from a seaweed to a dendritic morphology as the thermal gradient is lowered, consistent with recent experimental findings. We show that the morphology of crystal structures can be unambiguously characterized through the local interface velocity distribution. We derive semiempirically an estimate for the crossover from seaweed to dendrite as a function of thermal gradient and pulling speed.     

A simple approach for phase-modulated single-scan 2D NMR spectroscopy

Conventional NMR spectroscopy techniques require long acquisition times due to the recovery time between the repeated excitations necessary for each increment of the evolution times in the indirectly detected dimensions. Here we outline a pulse sequence element for gradient-assisted ultrafast multidimensional NMR spectroscopy using frequency-modulated 'chirp' pulses to generate phase-modulated magnetization in an indirectly detected spectral dimension. The potential of this sequence element is demonstrated by acquiring a correlation spectroscopy (COSY) spectrum in 96 ms. This new pulse sequence element is an extension of ultrafast spectroscopy techniques based on the generation of amplitude modulation of the NMR signal in the indirectly detected spectral dimensions. The use of phase modulation instead of amplitude modulation helps broaden the applicability and may provide an increase of sensitivity in some experiments due to the ability to distinguish between positive and negative frequency offsets relative to the carrier frequency of the sequence element.     

Megistoquinones I and II, two quinoline alkaloids with antibacterial activity from the bark of Sarcomelicope megistophylla

Two alkaloids, megistoquinone I (1) and megistoquinone II (2), were isolated from the bark of Sarcomelicope megistophylla. Their structures have been elucidated on the basis of MS and NMR data. Both belong to quinoline alkaloid series and should be considered as oxidation products of a furo[2,3-b]quinoline precursor. The two alkaloids showed antibacterial properties with minimum inhibitory concentration (MIC) ranging from 2.35 to 5.25 mg/ml for 1 and 0.73 to 1.23 mg/ml for 2.     

Recent developments in computational actinide chemistry

This review describes recent computational investigations into the electronic and geometric structures of molecular actinide compounds. Following brief introductions to (i) the effects of relativity in chemistry and (ii) ab initio and density functional quantum chemical methods, four areas of contemporary research are discussed. These are pi backbonding in uranium complexes, the geometric structures of bis benzene actinide compounds, the valence electronic structure of the uranyl ion, and the inverse trans influence in pseudo-octahedral [AnOX5]n-. Comparisons are made with experimental studies, and similarities and differences between d- and f-block chemistry are highlighted.     

Synthesis,structure, and reactivity of uranium(vi) nitrides

Uranium nitride compounds are important molecular analogues of uranium nitride materials such as UN and UN₂ which are effective catalysts in the Haber–Bosch synthesis of ammonia, but the synthesis of molecular nitrides remains a challenge and studies of the reactivity and of the nature of the bonding are poorly developed. Here we report the synthesis of the first nitride bridged uranium complexes containing U(vi) and provide a unique comparison of reactivity and bonding in U(vi)/U(vi), U(vi)/U(v) and U(v)/U(v) systems. Oxidation of the U(v)/U(v) bis-nitride [K₂{U(OSi(O^tBu)₃)₃(μ-N)}₂], 1, with mild oxidants yields the U(v)/U(vi) complexes [K{U(OSi(O^tBu)₃)₃(μ-N)}₂], 2 and [K₂{U(OSi(O^tBu)₃)₃}₂(μ-N)₂(μ-I)], 3 while oxidation with a stronger oxidant (“magic blue”) yields the U(vi)/U(vi) complex [{U(OSi(O^tBu)₃)₃}₂(μ-N)₂(μ-thf)], 4. The three complexes show very different stability and reactivity, with N₂ release observed for complex 4. Complex 2 undergoes hydrogenolysis to yield imido bridged [K₂{U(OSi(O^tBu)₃)₃(μ-NH)}₂], 6 and rare amido bridged U(iv)/U(iv) complexes [{U(OSi(O^tBu)₃)₃}₂(μ-NH₂)₂(μ-thf)], 7 while no hydrogenolysis could be observed for 4. Both complexes 2 and 4 react with H⁺ to yield quantitatively NH₄Cl, but only complex 2 reacts with CO and H₂. Differences in reactivity can be related to significant differences in the U–N bonding. Computational studies show a delocalised bond across the U–N–U for 1 and 2, but an asymmetric bonding scheme is found for the U(vi)/U(vi) complex 4 which shows a U–N σ orbital well localised to U N and π orbitals which partially delocalise to form the U–N single bond with the other uranium.

The first examples of molecular compounds containing the cyclic (U(vi)N)₂ and (U(v)U(vi)N)₂ cores were obtained by oxidation of the (U(v)U(v)N)₂ analogue. Different bonding within these complexes yields different stability and reactivity with CO and H₂.     

Structure, reactivity, and density functional theory analysis of the six-electron reductant, [(C5Me5)2U]2(mu-eta6:eta6-C6H6), synthesized via a new mode of (C5Me5)3M reactivity

The sterically crowded (C(5)Me(5))(3)U complex reacts with KC(8) or K/(18-crown-6) in benzene to form [(C(5)Me(5))(2)U](2)(mu-eta(6):eta(6)-C(6)H(6)), 1, and KC(5)Me(5). These reactions suggested that (C(5)Me(5))(3)U could be susceptible to (C(5)Me(5))(1-) substitution by benzene anions via ionic salt metathesis. To test this idea in the synthesis of a more conventional product, (C(5)Me(5))(3)U was treated with KN(SiMe(3))(2) to form (C(5)Me(5))(2)U[N(SiMe(3))(2)] and KC(5)Me(5). 1 has long U-C(C(5)Me(5)) bond distances comparable to (C(5)Me(5))(3)U, and it too is susceptible to (C(5)Me(5))(1-) substitution via ionic metathesis: 1 reacts with KN(SiMe(3))(2) to make its amide-substituted analogue [[(Me(3)Si)(2)N](C(5)Me(5))U](2)(mu-eta(6):eta(6)-C(6)H(6)), 2. Complexes 1 and 2 have nonplanar C(6)H(6)-derived ligands sandwiched between the two uranium ions. 1 and 2 were examined by reactivity studies, electronic absorption spectroscopy, and density functional theory calculations. [(C(5)Me(5))(2)U](2)(mu-eta(6):eta(6)-C(6)H(6)) functions as a six-electron reductant in its reaction with 3 equiv of cyclooctatetraene to form [(C(5)Me(5))(C(8)H(8))U](2)(mu-eta(3):eta(3)-C(8)H(8)), (C(5)Me(5))(2), and benzene. This multielectron transformation can be formally attributed to three different sources: two electrons from two U(III) centers, two electrons from sterically induced reduction by two (C(5)Me(5))(1-) ligands, and two electrons from a bridging (C(6)H(6))(2-) moiety.     

Hole localization in [AlO4]0 defects in silica materials

First-principles calculations based on cluster models have been performed to investigate the ground state and the optically excited states of the [AlO(4)](0) hole in alpha-quartz and in the siliceous zeolite ZSM-5. The structure and spectroscopic properties of this defect have been studied using the recently developed Becke88-Becke95 one-parameter model for kinetics (BB1K) functional of Zhao et al., [J. Phys. Chem. A 108, 2715 (2004)]. Our results show that the BB1K method is significantly more reliable and more accurate than the standard density-functional theory (DFT) functionals at reproducing the localized spin density on one oxygen atom and the hyperfine coupling constants associated with the hole. Furthermore, we find that the BB1K results are in close agreement with experiments, and with the self-interaction-free unrestricted Hartree-Fock (UHF) and unrestricted second-order M?ller-Plesset perturbation theory (UMP2) calculations. For the first time, we present results of the ground-state paramagnetic properties of the Al defect in ZSM-5. Similar to the theoretical work for defective alpha-quartz, we find that the BB1K, UHF, UHFLee-Yang-Parr, and UMP2 calculations show a localized hole on one oxygen neighboring the Al, while even the best to date thermochemically derived hybrid generalized gradient approximation density-functional, B97-2, predicts a different model where the hole is distributed over two oxygen. We have further considered the optical transitions of the [AlO(4)](0) center in alpha-quartz and ZSM-5. In both systems, our BB1K time-dependent density-functional theory (TDDFT) and configuration interaction singles (CIS) calculations predict that the most likely transition involves electron transfer from the hole-bearing oxygen to other neighboring oxygen ions. This reinforces the experimental conclusions obtained for defective alpha-quartz. Notably, the two lowest, most dominant excitation energies calculated by BB1K-TDDFT (1.99 and 3.03 eV) show excellent agreement with experiment (1.96 and 2.85 eV [B. K. Meyer, J.M. Spaeth, and J.A. Weil, J. Phys. C: Solid State Phys. 17, L31 (1987)]) clearly outperforming the CIS method and other DFT calculations available in the literature.     

The bond-forming reactions of atomic dications with neutral molecules: formation of ArNH+ and ArN+ from collisions of Ar2+ with NH3

An experimental and computational study has been performed to investigate the bond-forming reactivity between Ar(2+) and NH(3). Experimentally, we detect two previously unobserved bond-forming reactions between Ar(2+) and NH(3) forming ArN(+) and ArNH(+). This is the first experimental observation of a triatomic product ion (ArNH(+)) following a chemical reaction of a rare gas dication with a neutral. The intensity of ArNH(+) was found to decrease with increasing collision energy, with a corresponding increase in the intensity of ArN(+), indicating that ArN(+) is formed by the dissociation of ArNH(+). Key features on the potential energy surface for the reaction were calculated quantum chemically using CASSCF and MRCI methods. The calculated reaction mechanism, which takes place on a singlet surface, involves the initial formation of an Ar-N bond to give Ar-NH(3)(2+). This complexation is followed by proton loss via a transition state, and then loss of the two remaining hydrogen atoms in two subsequent activationless steps to give the products (3)ArN(+) + H(+) + 2H. This calculated pathway supports the sequential formation of ArN(+) from ArNH(+), as suggested by the experimental data. The calculations also indicate that no bond-forming pathway exists on the ground triplet surface for this system.     

Inclusion Complexes of Gold(I)-Dithiocarbamates with β-Cyclodextrin: A Journey from Drug Repurposing towards Drug Discovery

The gold(I)-dithiocarbamate (dtc) complex [Au(N,N-diethyl)dtc]₂ was identified as the active cytotoxic agent in the combination treatment of sodium aurothiomalate and disulfiram on a panel of cancer cell lines. In addition to demonstrating pronounced differential cytotoxicity to these cell lines, the gold complex showed no cross-resistance in therapy-surviving cancer cells. In the course of a medicinal chemistry campaign on this class of poorly soluble gold(I)-dtc complexes, >35 derivatives were synthesized and X-ray crystallography was used to examine structural aspects of the dtc moiety. A group of hydroxy-substituted complexes has an improved solubility profile, and it was found that these complexes form 2 : 1 host–guest inclusion complexes with β-cyclodextrin (CD), exhibiting a rarely observed “tail-to-tail” arrangement of the CD cones. Formulation of a hydroxy-substituted gold(I)-dtc complex with excess sulfobutylether-β-CD prevents the induction of mitochondrial reactive oxygen species, which is a major burden in the development of metallodrugs.