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21.
Summary We compare two methods (Mulliken charges and a distributed multipole analysis, DMA) of representing an ab initio charge distribution for calculating the electrostatic field and potential outside the molecule, using pyrimidine and the RNA base uracil as examples. This is done using a 3-D graphical display of the electrostatic fields, which, when used with real-time rotation, zooming and clipping, has many advantages for qualitatively assessing the electrostatic interactions of a molecule. The errors involved in using Mulliken point charges may be of similar magnitude to the total electrostatic field in regions which are important in recognition processes. The DMA representation automatically includes the anisotropic electrostatic effects of non-spherical features in the charge distribution of each atom, and yet the displayed electrostatic fields around the atoms which have lone-pair density do not show marked anisotropy. 相似文献
22.
Nigel J. Clarke Feng Li Andy J. Tomlinson Stephen Naylor 《Journal of the American Society for Mass Spectrometry》1998,9(1):88-91
The coupling of the widely used separation technique of conventional sodium dodecylsulfate polyacrylamide gel electrophoresis (SDS-PAGE) with the mass accuracy measurement capability of mass Spectrometry (MS) provides a very powerful analytical technique. However, at present, there is no simple, definitive method for coupling the two methods. Typically, separated proteins are extracted from the gel, either as the native protein or as a peptide mixture after in-gel proteolytic digestion, and then analyzed by mass Spectrometry. However, the various extraction techniques described previously have been labor intensive and require a large number of steps. The mass Spectrometry analysis of very low concentrations of in vivo derived proteins requires minimum sample handling and on-line concentration. Therefore, we have developed an efficient microelectroelution technique that is applied in a single step manner and contains an on-line concentration device. Initial results from this system have shown a high efficiency of analyte elution from the gel and a simple, robust technique for the coupling of SDS-containing gels with MALDI-TOF-MS analysis and a capability of analyzing proteins at the subpicomole level. 相似文献
23.
Incorporation of metalated nucleosides into DNA through covalent modification is crucial to measurement of thermal electron-transfer rates and the dependence of these rates with structure, distance, and position. Here, we report the first synthesis of an electron donor-acceptor pair of 5' metallonucleosides and their subsequent incorporation into oligonucleotides using solid-phase DNA synthesis techniques. Large-scale syntheses of metal-containing oligonucleotides are achieved using 5' modified phosporamidites containing [Ru(acac)(2)(IMPy)](2+) (acac is acetylacetonato; IMPy is 2'-iminomethylpyridyl-2'-deoxyuridine) (3) and [Ru(bpy)(2)(IMPy)](2+) (bpy is 2,2'-bipyridine; IMPy is 2'-iminomethylpyridyl-2'-deoxyuridine) (4). Duplexes formed with the metal-containing oligonucleotides exhibit thermal stability comparable to the corresponding unmetalated duplexes (T(m) of modified duplex = 49 degrees C vs T(m) of unmodified duplex = 47 degrees C). Electrochemical (3, E(1/2) = -0.04 V vs NHE; 4, E(1/2) = 1.12 V vs NHE), absorption (3, lambda(max) = 568, 369 nm; 4, lambda(max) = 480 nm), and emission (4, lambda(max) = 720 nm, tau = 55 ns, Phi = 1.2 x 10(-)(4)) data for the ruthenium-modified nucleosides and oligonucleotides indicate that incorporation into an oligonucleotide does not perturb the electronic properties of the ruthenium complex or the DNA significantly. In addition, the absence of any change in the emission properties upon metalated duplex formation suggests that the [Ru(bpy)(2)(IMPy)](2+)[Ru(acac)(2)(IMPy)](2+) pair will provide a valuable probe for DNA-mediated electron-transfer studies. 相似文献
24.
The inactive, nitrosyl bound form of Fe-type nitrile hydratase (NHase) contains two active site cysteine residues that are post-translationally modified to sulfenate (SO-) and sulfinate (SO2-) ligands. DFT and INDO/S calculations support the hypothesis that these unusual modifications play a key role in modulating the electronic absorption spectra and photoreactivity of the Fe(III) centre in the enzyme. 相似文献
25.
Prasain JK Patel R Kirk M Wilson L Botting N Darley-Usmar VM Barnes S 《Journal of mass spectrometry : JMS》2003,38(7):764-771
Electrospray ionization combined with tandem mass spectrometry was applied to a study of some representative chlorinated and nitrated isoflavones-potential metabolites of isoflavones in inflammatory cells. Upon collision-induced dissociation of deprotonated [M - H](-) ions of these compounds, a number of structurally characteristic product ions were produced. The product ion analysis of 3'- and 8-chlorodaidzein in the tandom mass spectra led to ready differentiation of these isomers. 3-Nitro derivatives of both genistein and daidzein have product ions due to the losses of HNO(2) and two OH groups. Chlorinated derivatives of isoflavones were detected in cell-based experiments and their structures were proposed by comparing the tandem mass spectra of their product ions with those of standards. This work provides a suitable analytical basis to aid the characterization of chlorinated and nitrated metabolites in studies in vivo and in vitro. 相似文献
26.
Measuring the metabolome: current analytical technologies 总被引:44,自引:0,他引:44
The post-genomics era has brought with it ever increasing demands to observe and characterise variation within biological systems. This variation has been studied at the genomic (gene function), proteomic (protein regulation) and the metabolomic (small molecular weight metabolite) levels. Whilst genomics and proteomics are generally studied using microarrays (genomics) and 2D-gels or mass spectrometry (proteomics), the technique of choice is less obvious in the area of metabolomics. Much work has been published employing mass spectrometry, NMR spectroscopy and vibrational spectroscopic techniques, amongst others, for the study of variations within the metabolome in many animal, plant and microbial systems. This review discusses the advantages and disadvantages of each technique, putting the current status of the field of metabolomics in context, and providing examples of applications for each technique employed. 相似文献
27.
Jonathan P. Blitz Nigel T. Lucas Mark G. Humphrey 《Journal of organometallic chemistry》2002,650(1-2):133-140
The 60-electron tetrahedral clusters W2Ir2(μ-L)(CO)8(η5-C5H4Me)2 [L=dppe (2), dppf (3)] have been prepared from reaction between W2Ir2(CO)10(η5-C5H4Me)2 (1) and the corresponding diphosphine in 52 and 66% yields, respectively. A structural study of 2 reveals that three edges of a WIr2 face are spanned by bridging carbonyls, that the iridium-ligated diphosphine coordinates diaxially and that the tungsten-bound methylcyclopentadienyls coordinate axially and apically with respect to the plane of bridging carbonyls. A structural study of 3 reveals that the dppf ligand bridges an Ir---Ir bond which is also spanned by a bridging carbonyl; tungsten-ligated methylcyclopentadienyl ligands and terminal carbonyls result in electronic asymmetry (17e and 19e iridium atoms) in the electron-precise cluster. Both clusters show two reversible one-electron oxidation processes and an irreversible two-electron reduction; the dppf-containing cluster 3 has a further, irreversible, one-electron oxidation process. UV–vis-NIR spectroelectrochemical studies of the 2→2+→22+ progression reveal the appearance of a low-energy transition on oxidation to 2+ which persists on further oxidation to 22+. 相似文献
28.
Jones NA Nepogodiev SA MacDonald CJ Hughes DL Field RA 《The Journal of organic chemistry》2005,70(21):8556-8559
Described herein is the synthesis of 3-C-carboxy-5-deoxy-L-xylose (aceric acid), a rare branched-chain sugar found in the complex pectic polysaccharide rhamnogalacturonan-II. The key synthetic step in the construction of aceric acid was the stereoselective addition of 2-trimethylsilyl thiazole to 5-deoxy-1,2-O-isopropylidene-alpha-L-erythro-pentofuran-3-ulose (2), which was prepared from L-xylose. The thiazole group was efficiently converted into the required carboxyl group via conventional transformations. Aceric acid was also synthesized by dihydroxylation of a 3-C-methylene derivative of 2 followed by oxidation of the resulting hydroxylmethyl group. The C-2 epimer of aceric acid was also synthesized using thiazole addition chemistry, starting from L-arabinose. 相似文献
29.
Nigel Stothard Robert Humpfer Horst-Henning Grotheer 《Chemical physics letters》1995,240(5-6):474-480
NH2 profiles were measured in a discharge flow reactor at ambient temperature by monitoring reactants and products with an electron impact mass spectrometer. At the low pressures used (0.7 and 1.0 mbar) the gas-phase self-reaction is dominated by a ‘bimolecular’ H2-eliminating exit channel with a rate coefficient of k3b(300 K) = (1.3 ± 0.5) × 10−12 cm3 molecule−1 s−1 and leading to N2H2 + H2 or NNH2 + H2. Although the wall loss for NH2 radicals is relatively small (kw ≈ 6–14 s−1), the contribution to the overall NH2 decay is important due to the relatively slow gas-phase reaction. The heterogeneous reaction yields N2H4 molecules. 相似文献
30.
We construct a solution to stochastic Navier-Stokes equations in dimension n4 with the feedback in both the external forces and a general infinite-dimensional noise. The solution is unique and adapted to the Brownian filtration in the 2-dimensional case with periodic boundary conditions or, when there is no feedback in the noise, for the Dirichlet boundary condition. The paper uses the methods of nonstandard analysis.The research of this author was supported by an SERC Grant. 相似文献