The role of post-translational modification in the photoregulation of Fe-type nitrile hydratase

The inactive, nitrosyl bound form of Fe-type nitrile hydratase (NHase) contains two active site cysteine residues that are post-translationally modified to sulfenate (SO-) and sulfinate (SO2-) ligands. DFT and INDO/S calculations support the hypothesis that these unusual modifications play a key role in modulating the electronic absorption spectra and photoreactivity of the Fe(III) centre in the enzyme.     

Mass spectrometric methods for the analysis of chlorinated and nitrated isoflavonoids: a novel class of biological metabolites

Electrospray ionization combined with tandem mass spectrometry was applied to a study of some representative chlorinated and nitrated isoflavones-potential metabolites of isoflavones in inflammatory cells. Upon collision-induced dissociation of deprotonated [M - H](-) ions of these compounds, a number of structurally characteristic product ions were produced. The product ion analysis of 3'- and 8-chlorodaidzein in the tandom mass spectra led to ready differentiation of these isomers. 3-Nitro derivatives of both genistein and daidzein have product ions due to the losses of HNO(2) and two OH groups. Chlorinated derivatives of isoflavones were detected in cell-based experiments and their structures were proposed by comparing the tandem mass spectra of their product ions with those of standards. This work provides a suitable analytical basis to aid the characterization of chlorinated and nitrated metabolites in studies in vivo and in vitro.     

Measuring the metabolome: current analytical technologies

The post-genomics era has brought with it ever increasing demands to observe and characterise variation within biological systems. This variation has been studied at the genomic (gene function), proteomic (protein regulation) and the metabolomic (small molecular weight metabolite) levels. Whilst genomics and proteomics are generally studied using microarrays (genomics) and 2D-gels or mass spectrometry (proteomics), the technique of choice is less obvious in the area of metabolomics. Much work has been published employing mass spectrometry, NMR spectroscopy and vibrational spectroscopic techniques, amongst others, for the study of variations within the metabolome in many animal, plant and microbial systems. This review discusses the advantages and disadvantages of each technique, putting the current status of the field of metabolomics in context, and providing examples of applications for each technique employed.     

Mixed-metal cluster chemistry Part 20. Syntheses, crystal structures and electrochemical studies of W2Ir2(μ-L)(CO)8(η-C5H4Me)2 (L=dppe, dppf)

The 60-electron tetrahedral clusters W₂Ir₂(μ-L)(CO)₈(η⁵-C₅H₄Me)₂ [L=dppe (2), dppf (3)] have been prepared from reaction between W₂Ir₂(CO)₁₀(η⁵-C₅H₄Me)₂ (1) and the corresponding diphosphine in 52 and 66% yields, respectively. A structural study of 2 reveals that three edges of a WIr₂ face are spanned by bridging carbonyls, that the iridium-ligated diphosphine coordinates diaxially and that the tungsten-bound methylcyclopentadienyls coordinate axially and apically with respect to the plane of bridging carbonyls. A structural study of 3 reveals that the dppf ligand bridges an Ir---Ir bond which is also spanned by a bridging carbonyl; tungsten-ligated methylcyclopentadienyl ligands and terminal carbonyls result in electronic asymmetry (17e and 19e iridium atoms) in the electron-precise cluster. Both clusters show two reversible one-electron oxidation processes and an irreversible two-electron reduction; the dppf-containing cluster 3 has a further, irreversible, one-electron oxidation process. UV–vis-NIR spectroelectrochemical studies of the 2→2⁺→2²⁺ progression reveal the appearance of a low-energy transition on oxidation to 2⁺ which persists on further oxidation to 2²⁺.     

Synthesis of the branched-chain sugar aceric acid: a unique component of the pectic polysaccharide rhamnogalacturonan-II

Described herein is the synthesis of 3-C-carboxy-5-deoxy-L-xylose (aceric acid), a rare branched-chain sugar found in the complex pectic polysaccharide rhamnogalacturonan-II. The key synthetic step in the construction of aceric acid was the stereoselective addition of 2-trimethylsilyl thiazole to 5-deoxy-1,2-O-isopropylidene-alpha-L-erythro-pentofuran-3-ulose (2), which was prepared from L-xylose. The thiazole group was efficiently converted into the required carboxyl group via conventional transformations. Aceric acid was also synthesized by dihydroxylation of a 3-C-methylene derivative of 2 followed by oxidation of the resulting hydroxylmethyl group. The C-2 epimer of aceric acid was also synthesized using thiazole addition chemistry, starting from L-arabinose.     

The multichannel reaction NH2 + NH2 at ambient temperature and low pressures

NH₂ profiles were measured in a discharge flow reactor at ambient temperature by monitoring reactants and products with an electron impact mass spectrometer. At the low pressures used (0.7 and 1.0 mbar) the gas-phase self-reaction is dominated by a ‘bimolecular’ H₂-eliminating exit channel with a rate coefficient of k_3b(300 K) = (1.3 ± 0.5) × 10⁻¹² cm³ molecule⁻¹ s⁻¹ and leading to N₂H₂ + H₂ or NNH₂ + H₂. Although the wall loss for NH₂ radicals is relatively small (k_w ≈ 6–14 s⁻¹), the contribution to the overall NH₂ decay is important due to the relatively slow gas-phase reaction. The heterogeneous reaction yields N₂H₄ molecules.     

Stochastic Navier-Stokes equations

We construct a solution to stochastic Navier-Stokes equations in dimension n4 with the feedback in both the external forces and a general infinite-dimensional noise. The solution is unique and adapted to the Brownian filtration in the 2-dimensional case with periodic boundary conditions or, when there is no feedback in the noise, for the Dirichlet boundary condition. The paper uses the methods of nonstandard analysis.The research of this author was supported by an SERC Grant.     

Computational convergence of electronic structure calculations of transition metal ligand complexes

Calculations of binding energies and optimum geometries of compounds of the series M(H₂O)⁺ with M = Sc to Zn have been carried out and compared with gas-phase experimental data and with the Rosi and Bauschlicher MCPF calculations. Hartree–Fock calculations and correlated calculations at MP2, MP4, and QCISD(T) levels were used to test the dependence of the results upon the level of correlation. A test of basis set dependence was also carried out, using parallel calculations on four basis sets ranging in size from a small DZ set to a TZ contraction. Correlation levels above MP2 and elaboration of the metal d-function basis set to (4d/3d) size or greater were both necessary for convergence with the most uniformly reliable results obtained from QCISD(T) calculations on a basis set with a (6d/4d) contraction for the d-function space. However, MP2 or higher-level calculations with a contracted four or five d function set [(5d/3d) or (4d/3d)] are capable of yielding results on binding energies and geometries close to the current gas-phase experimental uncertainty on electrostatically bound transition metal complexes. © 1993 John Wiley & Sons, Inc.     

Aristoserratin,ein neues Indolalkaloid aus Aristotelia serrata W.R.B. OLIVER und A. peduncularis (LABILL.) HOOK. F. 178. Mitteilung über organische Naturstoffe

Aristoserratine, a New Indole Alkaloid from Aristotelia serrata W.R.B. OLIVER and from A. peduncularis (LABILL .) HOOK . F. The new indole alkaloid aristoserratine (2) has been isolated from Aristotelia. Its structure and absolute configuration were elucidated on the basis of spectroscopic data.     

The Structure of the Alkaloid Peduncularine. Communication no. 172 on organic natural products

The revised structure 1 is put forward for peduncularine, the main alkaloid of Aristotelia peduncularis (Labill.) HOOK. F. (Elaeocarpaceae), on the basis of its spectroscopic properties and those of its degradation products, the Hofmann base 3 and the hydrogenation product 4 . Structure 1 represents the relative configuration of the alkaloid. Peduncularine belongs to the class of indole alkaloids with a monoterpene unit as the aliphatic portion. To our knowledge it constitutes the first example in which an isopropyl group has become detached from the terpene unit and occurs as a substituent on nitrogen.