Binding of hairpin polyamides to DNA studied by fluorescence correlation spectroscopy for DNA nanoarchitectures

We have recently constructed a “DNA strut” consisting of two DNA-binding hairpin polyamides of Dervan-type connected via a long flexible linker and were able to show that this strut can be used to sequence-selectively connect DNA helices. This approach provides a second structural element (besides the Watson–Crick base pairing) for the assembly of higher-order DNA nanoarchitectures from smaller DNA building blocks. Since none of the existing analytical techniques for studying this kind of system were found suitable for detection and quantification of the formation of the resulting complexes, we chose fluorescence correlation spectroscopy (FCS). In the present study we show that FCS allowed us in a versatile and fast way to investigate the binding of Dervan polyamides to DNA. In particular it also shows its power in the quantitative detection of the formation of multimeric complexes and the in investigation of binding under nonphysiological conditions. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Amperometric sandwich-type aptasensor based on peroxidase mimetic Au@Pt for the carcinoembryonic antigen

For sensitive analysis of cancer biomarker carcinoembryonic antigen (CEA), an amperometric sandwich-type aptasensor is proposed based on a signal amplification strategy of Au@Pt bimetallic nanoprobes. As the excellent catalytic activity to hydrogen peroxide (H₂O₂), core-shell Au@Pt nanoparticles are employed as nanoprobes by conjugating directly with the secondary aptamer of CEA (Apt-II). Due to the synergic recognition effect of dual aptamers and the excellent catalytic activity of nanoprobes, this amperometric sandwich-type aptasensor for CEA exhibits high specificity and good sensitivity with a limit of detection of 0.31 ng/mL, along with a wide linear range from 0.1 ng/mL to 100 ng/mL.     

Titanium Salalen Catalyzed Enantioselective Benzylic Hydroxylation

The titanium complex of the cis-1,2-diaminocyclohexane (cis-DACH) derived Berkessel-salalen ligand is a highly efficient and enantioselective catalyst for the asymmetric epoxidation of terminal olefins with hydrogen peroxide (“Berkessel-Katsuki catalyst”). We herein report that this epoxidation catalyst also effects the highly enantioselective hydroxylation of benzylic C−H bonds with hydrogen peroxide. Mechanism-based ligand optimization identified a novel nitro-salalen Ti-catalyst of the highest efficiency ever reported for asymmetric catalytic benzylic hydroxylation, with enantioselectivities of up to 98 % ee, while overoxidation to ketone is marginal. The novel nitro-salalen Ti-catalyst also shows enhanced epoxidation efficiency, as evidenced by e.g. the conversion of 1-decene to its epoxide in 90 % yield with 94 % ee, at a catalyst loading of 0.1 mol-% only.     

Chiral discrimination in stearoyl amine glycerol monolayers

Chiral discrimination in Langmuir monolayers of amphiphilic 1-stearylamine-glycerol is studied using the hybrid quantum mechanical/molecular mechanical method. Using the experimental information about the lattice structure [D. Vollhardt, U. Gehlert, J. Phys. Chem. B. 2002, 106, 4419], the intermolecular interaction profiles for enantiomeric and racemic pair are studied as a function of mutual tilt and azimuth for different values of intermolecular separation. The present study reveals that, at shorter separation, the interaction profile of the racemic pair has deeper minima than the enantiomeric pair, whereas at larger separation the minimum of the enantiomeric pair is deeper. Thus, the theoretical studies reveal an interesting crossover from heterochiral preference to homochiral preference in 1-stearylamine-glycerol monolayers, with the increase in the intermolecular separation corresponding to a larger area per molecule in the monolayer. This predicts that, with gradual compression, the interactions between racemic pair dominate the experimental features, whereas, under nonequilibrium conditions at the beginning of the formation of the condensed phase, the experimental characteristics of homochirality are observable. The study conclusively shows that the chiral structure of the molecule and the lattice packing drive the chiral preference at the mesoscopic level.     

Role of dipolar interaction in the mesoscopic domains of phospholipid monolayers: dipalmitoylphosphatidylcholine and dipalmitoylphosphatidylethanolamine

The role of dipolar interactions in determining the lipid domain shapes at the air-water interface with a change in the chemical structure of the head groups of lipids is theoretically studied. The phospholipids considered are dipalmitoylphosphatidylcholine (D,L-DPPC) and dipalmitoylphosphatidylethanolamine (DPPE). Despite closely similar chemical structures, the domains of the two lipids are strikingly different. The DPPC domains exhibit elongated arms, while the DPPE domains are nearly round-shaped. To compare the dipolar repulsions in the domains of the two phospholipids, different energy-minimized conformers of DPPC and DPPE are studied using the semiempirical quantum chemical method (PM3). It is found that the dipole moment of DPPC is significantly larger than that of DPPE. The in-plane and out-of-plane components of the dipole moments are calculated using grazing incidence X-ray diffraction data at different surface pressure values, as used in the experiment. The result indicates that the magnitude of the dipolar interaction is significantly larger in DPPC than that in DPPE over the surface pressure range considered. The enhanced dipolar repulsion corroborates well with the difference in the domain shapes in the two phospholipid monolayers. The larger dipolar repulsion in DPPC leads to development of elongated domain arms, while relatively less dipolar repulsion allows a closed shape of the condensed-phase DPPE domains.     

Preparation of size-controlled, highly populated, stable, and nearly monodispersed Ag nanoparticles in an organic medium from a simple interfacial redox process using a conducting polymer

The reducing property of an organically soluble conducting polymer (poly(o-methoxyaniline), POMA) is used to prepare monodisperse, size-controlled, highly populated, and highly stable silver nanoparticles in an organic medium through an interfacial redox process with an aqueous AgNO3 solution. The transition of emeraldine base (EB) to the pernigraniline base (PB) form of POMA occurs during nanoparticle formation, and the nitrogen atoms of POMA(PB) stabilize Ag nanoparticles by coordination to the adsorbed Ag(+) on the nanoparticle surface. The conductivity of the nanocomposite is on the order of 10(-11) S/cm, indicating that no doping of POMA occurs under the preparation conditions. The nanoparticles are free of excess oxidant and external stabilizer particles. The POMA (EB) concentration tailors the size of nanoparticles, and at its higher concentration (0.01% POMA with 0.01 N AgNO3), very dense Ag nanoparticles (6 x 10(15) particles/m(2)) of almost uniform size and shape are produced. The rate constant and Avrami exponent values of the nanoparticle formation are measured from the time-dependent UV-vis spectra using the Avrami equation. The Avrami exponent (n) values are close to 1, indicating 2D athermal nucleation with the circular shape of the nuclei having diffusion-controlled growth. The rate constant values are almost independent of AgNO3 concentration but are strongly dependent on POMA concentration. The higher rate constant with increasing POMA(EB) concentration has been attributed for the lowering of nanoparticle size due to increased nucleation density.     

An equilibrium study on the distribution of structural defects between the lamellar and amorphous portions of poly(vinylidene fluoride) and (vinylidene fluoride‐tetra fluoro ethylene) copolymer crystals

Samples of poly(vinylidene fluoride) (PVF₂) and (vinylidene fluoride‐tetra fluoroethylene) (VF₂‐VF₄) copolymer were etched with a chromium‐based etching reagent. The etching rate was lower for the VF₂‐VF₄ copolymer samples than for the PVF₂ samples. The melting point and enthalpy of fusion increased with increased etching time of the etched specimen. This was also true for the melt‐quenched (etched) samples, whose values were always lower than those obtained from the direct run of the etched samples. The scanning electron micrographs of specimens etched for 24 h indicated that only the amorphous portion was etched without affecting the crystalline lamella. The sequence distribution of the PVF₂ and VF₂‐VF₄ copolymer crystals were determined by ¹⁹F NMR measurements of the samples and their etched species. The observed probabilities (P_obs), calculated from the integrated area of the NMR peaks, indicated that the crystalline lamella had a more oriented chain structure than that of the amorphous overlayer portion. The head‐to‐head defects calculated from the aforementioned sequence analysis indicated a greater propensity in the amorphous portion than in the crystalline lamella. The equilibrium constant (K) for the distribution of defects between the lamella and amorphous portion of the crystal varied from 0.7 to 0.9. It was higher at a higher quenching rate of the crystallization, and in the isothermal crystallization, it also had a substantially high value, indicating the equilibrium inclusion of defects in the crystal. The distribution constant increased with an increase in the defect content in the chain and decreased with an increase in the defect size. The sequence distribution data, analyzed through a suitable melting‐point depression equation, indicated a defect energy of 2.25 kcal/mol for the α‐phase PVF₂ crystals and 0.68 kcal/mol for the β‐phase VF₂‐VF₄ copolymer. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 297–308, 2000     

Cobalt-thioalkylazoimidazole complexes: Structures, spectra and redox properties

1-Alkyl-2-{(o-thioalkyl)phenylazo}imidazole (SRaaiNR^/, 1) reacts with Co(ClO₄)₂·6H₂O to form [Co(SRaaiNR^/)₂](ClO₄)₂ (2). The single crystal X-ray structure of one of the complexes of 2 shows a tridentate chelation N(imidazole), N(azo), S(thioether) system. In the structure one of ClO₄⁻ anions shows disorder and forms an (imidazole)C–H···O(ClO₃) interaction leading to a 1-D chain. Co(OAc)₂.4H₂O and SRaaiNR^/ react in the presence of NH₄SCN (1:1:2 mole ratio) in methanol and the complex [Co(SRaaiNR^/)₂(SCN)₂] (3) has been separated. The single crystal X-ray structure determination has established the structure of the complexes in which the ligand SRaaiNR^/ acts in a bidentate N(imidazole), N(azo) chelation mode. A cyclic voltammogram shows a Co(III)/Co(II) oxidative response at 0.6–0.8 V and azo reductions. DFT computation using optimized geometry support the electronic spectral and redox properties of the complexes.