Development of a multiplex UPLC-MRM MS method for quantification of human membrane transport proteins OATP1B1, OATP1B3 and OATP2B1 in in vitro systems and tissues

OATP1B1, OATP1B3 and OATP2B1 are important members of the organic anion transporting polypeptides (OATP) family and are implicated in the hepatic disposition of endobiotics and xenobiotics. Quantitating the expression levels of human OATP1B1, OATP1B3 and OATP2B1 in in vitro systems and tissue samples could significantly improve attempts to scale up in vitro data and result in more effective in vitro–in vivo correlation of transporter-mediated effects on drug disposition, such as hepatic clearance. In the present study, a quantification method was developed, characterized, and implemented for simultaneous determination of human OATP1B1, OATP1B3 and OATP2B1 in HEK cells transfected with OATP-expressing plasmid vectors (SLCO1B1, SLCO1B3, and SLCO2B1, respectively), human hepatocytes, human brain capillary endothelial cells, and humanized mouse liver tissue using UPLC-MRM MS. Purified membrane protein standards prepared and characterized as previously reported (Protein Expr. Purif. 2008, 57, 163-71) were first used as standards for absolute quantification of the expression levels of the three human OATP membrane proteins. The specificity of the optimized MRM transitions were characterized by analyzing the tryptic digests of the membrane protein fraction of wild type HEK cells and control mouse liver tissue using the herein reported UPLC-MRM MS method. The linearity of the calibration curve spanned from 0.2 μg mL⁻¹ (0.040 μg mg⁻¹) to 20 μg mL⁻¹ (4.0 μg mg⁻¹), with accuracy (% RE) within 15% at all concentrations examined for all three OATPs of interest in this study. The intra- and inter-day assay accuracy (% RE) and coefficient of variations (% CV) of triplicates are all within 15% for all levels of quality control samples prepared by mixing the membrane fraction of control mouse liver tissue with the required amount of purified human OATP1B1, OATP1B3 and OATP2B1.     

Synthesis of well-defined hydrogel networks using click chemistry

New PEG-based hydrogel materials have been synthesized by Click chemistry and shown to result in well-defined networks having significantly improved mechanical properties; the selectivity of the azide/acetylene coupling reaction also allows for the incorporation of various additives and functional groups leading to chemical tailoring of the hydrogels.     

Cadmium bioavailability and speciation using the permeation liquid membrane

The permeation liquid membrane (PLM) technique was used to evaluate cadmium speciation in media resembling natural freshwaters. A planar sheet PLM system was characterized by measuring Cd fluxes in the absence and presence of complexing agents such as citrate, malonate, nitrilotriacetate and the Suwannee River standard humic acid. Comparison with theoretical speciation calculations and the results of a Cd²⁺ selective electrode, showed that free Cd was correctly measured using the planar sheet PLM within the studied concentration range, i.e. 10⁻⁸ to 10⁻⁴ M. The effect of pH and potentially co-transported ions on Cd transport through the PLM was also studied. An example of the ability of the hollow-fiber PLM (HFPLM) to measure free Cd in the nM range is also presented. In order to evaluate the usefulness of the technique as a predictor of bioavailability, Cd PLM measurements (fluxes) were compared to Cd biouptake (internalization flux) for a freshwater alga, Chlorella kesslerii, in the absence and presence of SRHA. The use of PLM measurements is shown to be an attractive tool to better understand Cd biouptake.     

O2 reduction on graphite and nitrogen-doped graphite: experiment and theory

An experimental and theoretical study of electroreduction of oxygen to hydrogen peroxide is presented. The experimental measurements of nitrided Ketjenblack indicated an onset potential for reduction of approximately 0.5 V (SHE) compared to the onset potential of 0.2 V observed for untreated carbon. Quantum calculations on cluster models of nitrided and un-nitrided graphite sheets show that carbon radical sites formed adjacent to substitutional N in graphite are active for O2 electroreduction to H2O2 via and adsorbed OOH intermediate. The weak catalytic effect of untreated carbon is attributed to weaker bonding of OOH to the H atom-terminated graphite edges. Substitutional N atoms that are far from graphite sheet edges will be active, and those that are close to the edges will be less active. Interference from electrochemical reduction of H atoms on the reactive sites is considered, and it is shown that in the potential range of H2O2 formation the reactive sites are not blocked by adsorbed H atoms.     

Kinetic Study of Peroxidase‐Catalyzed Coupling of Benzene‐1,4‐diamine and N‐(2‐Aminoethyl)naphthalen‐1‐amine: Development of Micromolar Hydrogen Peroxide Reaction System

A novel chromogenic method to measure the peroxidase activity using para‐phenylenediamine dihydrochloride (=benzene‐1,4‐diamine hydrochloride; PPDD) and N‐(1‐naphthyl)ethylenediamine dihydrochloride (=N‐(2‐aminoethyl)naphthalen‐1‐amine; NEDA) is presented. The PPDD entraps the free radical and gets oxidized to electrophilic diimine, which couples with NEDA to give an intense red‐colored chromogenic species with maximum absorbance at 490 nm. This assay was adopted for the quantification of H₂O₂ between 20 and 160 μM . Catalytic efficiency and catalytic power of the commercial peroxidase were found to be 4.47×10⁴ M ^?1 min^?1 and 3.38×10^?4 min^?1, respectively. The catalytic constant (k_cat) and specificity constant (k_cat/K_m) at saturated concentration of the co‐substrates were 0.0245×10³ min^?1 and 0.0445 μM ^?1 min^?1, respectively. The chromogenic coupling reaction has a minimum interference from the reducing substances such as ascorbic acid, L ‐cystein, citric acid, and oxalic acid. The method being simple, rapid, precise, and sensitive, its applicability has been tested in the crude vegetable extracts that showed peroxidase activity.     

Design,synthesis and biological evaluation of novel isoniazid hybrids

We herein report the design and synthesis of novel isoniazid derivatives. Isoniazid derived Schiff bases (3 a-d) were subjected to cyclization with acetic anhydride and sulphuric acid to yield the 5′-substituted-3′-acetyl-5-(pyridin-4-yl)-3H-spiro[indole-3, 2-[1′, 3′, 4’]oxadiazol]-2′-yl acetates (4 a-d) and 8′-substituted-3’-(pyridin-4-yl)[1′,3′,4’]oxadiazino [6,5-b]indoles (5 a-d) respectively. The advantages of spectral methods were used for the confirmation of the structure of all the newly synthesized hybrid molecules. Further, these compounds were evaluated for their antibacterial activity against B. Subtilis, S. aureus, E. coli & S. typhi, antifungal activity against C. albicans, C. oxysporum, A. Flavus & A. niger, and antimycobacterial activity against M. tuberculosis. Amongst, the compounds 4b, 4c and 5c showed excellent inhibitory activity against tested microorganisms. Also, the DNA cleavage activity of selected compounds was carried out by the AGE method.     

Additive Positive Stable Frailty Models

In this article, we describe an additive stable frailty model for multivariate times to events data using a flexible baseline hazard, and assuming that the frailty component for each individual is described by additive functions of independent positive stable random variables with possibly different stability indices. Dependence properties of this frailty model are investigated. To carry out inference, the likelihood function is derived by replacing high-dimensional integration by Monte Carlo simulation. Markov chain Monte Carlo algorithms enable estimation and model checking in the Bayesian framework.      

Control of molecular topology and metal nuclearity in multimetallic assemblies: designer metallosiloxanes derived from silanetriols

Lipophilic N-bonded silanetriol RSi(OH)(3) (R=(2,6-iPr(2)C(6)H(3))N(SiMe(3))) can be utilized as an effective synthon for building a variety of multimetallic assemblies containing the Si-O-M motif. The type of metallosiloxane synthesized-its nuclearity and its molecular topology-can be readily modulated by the choice of the metal substrate, reaction stoichiometry, and reaction conditions. It is anticipated that the synthetic principles elaborated here will allow the design of many other multifunctional synthons.     

Clustering Nonlinear,Nonstationary Time Series Using BSLEX

Accurate clustering of time series is a challenging problem for data arising from areas such as financial markets, biomedical studies, and environmental sciences, especially when some, or all, of the series exhibit nonlinearity and nonstationarity. When a subset of the series exhibits nonlinear characteristics, frequency domain clustering methods based on higher-order spectral properties, such as the bispectra or trispectra are useful. While these methods address nonlinearity, they rely on the assumption of series stationarity. We propose the Bispectral Smooth Localized Complex EXponential (BSLEX) approach for clustering nonlinear and nonstationary time series. BSLEX is an extension of the SLEX approach for linear, nonstationary series, and overcomes the challenges of both nonlinearity and nonstationarity through smooth partitions of the nonstationary time series into stationary subsets in a dyadic fashion. The performance of the BSLEX approach is illustrated via simulation where several nonstationary or nonlinear time series are clustered, as well as via accurate clustering of the records of 16 seismic events, eight of which are earthquakes and eight are explosions. We illustrate the utility of the approach by clustering S&P 100 financial returns.