The molecular topography of phytochrome: chromophore and apoprotein

Phytochrome serves as the photochromic receptor for a number of morphogenic and developmental responses to red light in higher plants. The photoreversible phototransformation of 124 kDa oat phytochrome involves several structural changes in the chromophore and the apoprotein, including a configurational/conformational isomerization and secondary/tertiary structural changes respectively. For example, there appears to be a specific interaction between the chromophore and the amino terminus segment in the Pfr form of phytochrome, which results in a photoreversible peptide folding of the amino terminus peptide chain. Other structural changes also accompany the phototransformation, as has been probed by peptide mapping, phosphorylation, and monoclonal antibodies.     

Density functional theory study of the mechanism of the proline-catalyzed intermolecular aldol reaction

Transition structures associated with the C-C bond-formation step of the proline-catalyzed intermolecular aldol reaction between acetone and isobutyraldehyde have been studies using density functional theory methods at the B3LYP/6-31G** computational level. A continuum model has been selected to represent solvent effects. For this step, which is the stereocontrolling and rate-determining step, four reactive channels corresponding to the syn and anti arrangement of the active methylene of the enamine relative to the carboxylic acid group of l-proline and the re and si attack modes to both faces of the aldehyde carbonyl group have been analyzed. The B3LYP/6-31G** energies are in good agreement with experiment, allowing us to explain the origin of the catalysis and stereoselectivity for these proline-catalyzed aldol reactions. Received: 2 April 2002 / Accepted: 18 July 2002 / Published online: 11 October 2002 Acknowledgements. This work was supported by research funds provided by the Ministerio de Educación y Cultura of the Spanish Government by DGICYT (project PB98–1429). All the calculations were performed on a Cray–Silicon Graphics Origin 2000 of the Servicio de Informática de la Universidad de Valencia. We are most indebted to this center for providing us with computer capabilities. Correspondence to: L. R. Domingo e-mail: domingo@utopia.uv.es     

Microstructure and electrical properties of BaTiO<Subscript>3</Subscript> and (Ba,Sr)TiO<Subscript>3</Subscript> ferroelectric thin films on nickel electrodes

Nickel thin films have been sputtered on standard Si/SiO₂ substrates with TiO₂ as an adhesive layer. The thermal stability of these substrates was analyzed. SEM images show an increase in grain size with annealing temperature. They were found to be stable till 800°C, beyond which the nickel layer disintegrated. These substrates were used for deposition of BaTiO₃ and (Ba,Sr)TiO₃ dielectric thin films under a reducing atmosphere. The dielectric thin films were processed with various pyrolysis and annealing temperatures in order to optimize the dielectric properties. Increased pyrolysis temperatures showed an increase in the grain size. Results on these nickelised substrates were finally compared with dielectric films deposited on platinized silicon substrates under identical conditions but crystallized in an oxygen atmosphere.     

Fabrication of lead titanate single crystalline nanowires by hydrothermal method and their characterization

Single crystalline nanowires of lead titanate (PbTiO₃) were fabricated by hydrothermal method at 200°C using lead acetate and n-tetrabutyl titanate as starting materials, where sodium hydroxide was served as a mineralizer. Crystalline phases, microstructure and optical properties of PbTiO₃ nanowires were investigated. The PbTiO₃ nanowires were uniform and continuous along the long axis, and were composed of single crystalline PbTiO₃ with a tetragonal perovskite structure. The diameter of a single nanowire was around 12 nm and the length reached up to 3 μm. The chemical composition of the samples and the valence states of elements were determined by X-ray photoelectron spectroscopy (XPS). The ultraviolet/visible absorption spectroscopic investigation suggested that the absorption edge of optical transition of the first excitonic state occurred at around 320 nm. A blue-green light emission peaking at about 471 nm (2.63 eV) is observed at room temperature, and the intensity of this emission increased with increasing excitation wavelength. Oxygen vacancies are responsible for the light emission of PbTiO₃ nanowires.     

Synthesis of Phosphaformamidines and Phosphaformamidinates

A large‐scale synthetic route to a variety of phosphaformamidines and phosphaformamidinates, a type of derivative that was not accessible by the methods previously known for preparing phosphaamidines and phosphaamidinates, is reported. Thermally stable ethyl N‐arylformimidates 1 (ArN?CH(OEt), Ar=2,4,6‐(Me)₃Ph or 2,6‐(iPr)₂Ph) readily reacted with lithium dialkyl‐ and diarylphosphanides to afford the corresponding N‐aryl phosphaformamidines in 80 and 60 % yield, respectively, whereas with lithium (aryl)(silyl)phosphanide, the N‐aryl‐N‐silylphosphaformamidine (60 % yield) was obtained. Addition of primary lithium arylphosphanides to 1 followed by addition of a stoichiometric amount of nBuLi gave rise to the respective phosphaformamidinates (70–88 % yield). Methanolysis of the products afforded the N‐aryl‐N‐hydrogenophosphaformamidines (90–95 % yield). The solid‐state structure of one of the phosphaformamidinates is also presented.     

Studies on stereoselective approaches to β-carboline derivatives

Transformation of β-carboline derivatives into optically active entities were studied and the de and ee values of the resulted compounds were detected. Dedicated to Professor Károly Lempert on his 80th birthday.     

Synthesis and crystallization kinetics of the novel ion exchanger Na<Subscript>4</Subscript>Ti<Subscript>4</Subscript>Si<Subscript>3</Subscript>O<Subscript>10</Subscript> for cesium removal

Thermodynamics and crystallization kinetics of the hydrothermal synthesis of Na₄Ti₄Si₃O₁₀ (NaTS) were systemically studied by both experiments and model simulation. Experimental results showed that the curve of crystallinity with time was a characteristic signmoid in the shape that indicated the crystallization of Na₄Ti₄Si₃O₁₀ was a typical spontaneous nucleation process on the laboratory scale. Crystallization of NaTS belongs to the liquid-liquid transformation mechanism and the reaction is endothermic (ΔH = 15.3 kJ/mol). A mathematic model of crystallization kinetics was developed to simulate the synthesis of NaTS. Runge-Kutta and simplex methods were adopted to solve the partial differential equations. Model results fitted well with the experimental data and showed that the synthesis process belongs to spontaneous nucleation and crystal growth. Moreover, the very small crystal growth constant (5.6·10⁻⁷) and gel dissolution constant (7.0·10⁻⁷) indicate they are the rate-limiting steps of the whole synthesis process.     

Groups of paramagnetic centres in coal samples with different carbon contents

Complex systems of paramagnetic centres existing in demineralised flame coal (71.4 wt% C), medium-rank coal (85.6 wt% C) and anthracite (94.9 wt% C) were analysed by electron paramagnetic resonance spectroscopy (EPR). Different groups of paramagnetic centres were searched in macerals (exinite, vitrinite, inertinite) of coals with carbon contents of 73.8 wt% C and 85.6 wt% C. Experimental EPR spectra were fitted by different superposition of theoretical lines. Total concentration of paramagnetic centres both in coal and macerals increases with carbon content in the sample. Total concentration of paramagnetic centres in macerals increases from exinite to inertinite. Four groups of paramagnetic centres were found in medium-rank coal, and only two groups exist in flame coal and anthracite. The EPR spectrum of medium-rank coal is a superposition of two broad and two narrow lines. Both broad and narrow, and two narrow lines were measured in EPR spectra of flame coal and anthracite, respectively. Two types of paramagnetic centres with broad lines and one group with narrow lines exist in exinite and vitrinite from medium-rank coal. Two narrow components were observed in EPR spectra of its inertinite. Two different broad electron paramagnetic resonance signals were detected for macerals from low-coalificated coal. Paramagnetic centres systems of medium-rank coal samples reveal the most complex character. Broad EPR lines were not observed for the higher coalificated samples, i.e., anthracite and inertinite from medium-rank coal. Narrow lines do not occur in EPR spectra of low-coalificated macerals. Strong dipolar interactions and fast spin-lattice relaxation processes are characteristic for paramagnetic centres with broad lines. Strong exchange interactions and short spin-lattice relaxation time were measured for paramagnetic centres with the narrowest EPR signals.     

Oxidation of some catecholamines by sodium N-chloro-p-toluenesulfonamide in acid medium: A kinetic and mechanistic approach

The kinetics of the oxidation of five catecholamines viz., dopamine (A), L-dopa (B), methyldopa (C), epinephrine (D) and norepinephrine (E) by sodium N-chloro-p-toluenesulfonamide or chloramine-T (CAT) in presence of HClO₄ was studied at 30±0.1 °C. The five reactions followed identical kinetics with a first-order dependence on [CAT] _o , fractional-order in [substrate] _o , and inverse fractional-order in [H⁺]. Under comparable experimental conditions, the rate of oxidation of catecholamines increases in the order D>E>A>B>C. The variation of ionic strength of the medium and the addition of p-toluenesulfonamide or halide ions had no significant effect on the reaction rate. The rate increased with decreasing dielectric constant of the medium. The solvent isotope effect was studied using D₂O. A Michaelis-Menten type mechanism has been suggested to explain the results. Equilibrium and decomposition constants for CAT-catecholamine complexes have been evaluated. CH₃C₆H₄SO₂NHCl of the oxidant has been postulated as the reactive oxidizing species and oxidation products were identified. An isokinetic relationship is observed with β=361 K, indicating that enthalpy factors control the reaction rate. The mechanism proposed and the derived rate law are consistent with the observed kinetics.     

The role of neuropeptide somatostatin in the brain and its application in treating neurological disorders

Somatostatin (SST) is a well-known neuropeptide that is expressed throughout the brain. In the cortex, SST is expressed in a subset of GABAergic neurons and is known as a protein marker of inhibitory interneurons. Recent studies have identified the key functions of SST in modulating cortical circuits in the brain and cognitive function. Furthermore, reduced expression of SST is a hallmark of various neurological disorders, including Alzheimer’s disease and depression. In this review, we summarize the current knowledge on SST expression and function in the brain. In particular, we describe the physiological roles of SST-positive interneurons in the cortex. We further describe the causal relationship between pathophysiological changes in SST function and various neurological disorders, such as Alzheimer’s disease. Finally, we discuss potential treatments and possibility of novel drug developments for neurological disorders based on the current knowledge on the function of SST and SST analogs in the brain derived from experimental and clinical studies.Subject terms: Molecular neuroscience, Drug development