Molecular dynamics simulations of aqueous solutions of ethanolamines

We report on molecular dynamics simulations performed at constant temperature and pressure to study ethanolamines as pure components and in aqueous solutions. A new geometric integration algorithm that preserves the correct phase space volume is employed to study molecules having up to three ethanol chains. The most stable geometry, rotational barriers, and atomic charges were obtained by ab initio calculations in the gas phase. The calculated dipole moments agree well with available experimental data. The most stable conformation, due to intramolecular hydrogen bonding interactions, has a ringlike structure in one of the ethanol chains, leading to high molecular stability. All molecular dynamics simulations were performed in the liquid phase. The interaction parameters are the same for the atoms in the ethanol chains, reducing the number of variables in the potential model. Intermolecular hydrogen bonding is also analyzed, and it is shown that water associates at low water mole fractions. The force field reproduced (within 1%) the experimental liquid densities at different temperatures of pure components and aqueous solutions at 313 K. The excess and partial molar volumes are analyzed as a function of ethanolamine concentration.     

The mechanism of the homogeneous,unimolecular gas‐phase elimination kinetic of 1,1‐dimethoxycyclohexane: experimental and theoretical studies

The gas‐phase elimination of 1,1‐dimethoxycyclohexane yielded 1‐methoxy‐1‐cyclohexene and methanol. The kinetics were determined in a static system, with the vessels deactivated with allyl bromide, and in the presence of the free radical inhibitor cyclohexene. The working temperature was 310–360 °C and the pressure was 25–85 Torr. The reaction was found to be homogeneous, unimolecular, and follows a first‐order rate law. The temperature dependence of the rate coefficients is given by the following Arrhenius equation: log k(s^?1) = [(13.82 ± 0.07) – (193.9 ± 1.0)(kJ mol^?1)](2.303RT)^?1; r = 0.9995. Theoretical calculations were carried out using density functional theory (DFT) functionals B3LYP, MPW1PW91, and PBE with the basis set 6‐31G(d,p) and 6‐31G++(d,p). The calculated values for the energy of activation and enthalpy of activation are in reasonably good agreement with the experimental values using the PBE/6‐31G (d,p) level of theory. Both experimental results and theoretical calculations suggest a molecular mechanism involving a concerted polar four‐membered cyclic transition state. The transition state structure of methanol elimination from 1,1‐dimethoxycyclohexane is characterized by a significantly elongated C? O bond, while the C_β? H bond is stretched to a smaller extent, as compared to the reactant. The process can be described as moderately asynchronic with some charge separation in the TS. Copyright © 2010 John Wiley & Sons, Ltd.     

A gravity-independent single-phase electrode reservoir for capillary electrophoresis applications

Capillary electrophoresis (CE) holds great promise as an in situ analytical technique for a variety of applications. However, typical instrumentation operates with open reservoirs (e.g., vials) to accommodate reagents and samples, which is problematic for automated instruments designed for space or underwater applications that may be operated in various orientations. Microgravity conditions add an additional challenge due to the unpredictable position of the headspace (air layer above the liquid) in any two-phase reservoir. One potential solution for these applications is to use a headspace-free, flow-through reservoir design that is sealed and connected to the necessary reagents and samples. Here, we demonstrate a flow-through high-voltage (HV) reservoir for CE that is compatible with automated in situ exploration needs, and which can be electrically isolated from its source fluidics (in order to prevent unwanted leakage current). We also demonstrate how the overall system can be rationally designed based on the operational parameters for CE to prevent electrolysis products generated at the electrode from entering the capillary and interfering with the CE separation. A reservoir was demonstrated with a 19 mm long, 1.8 mm inner diameter channel connecting the separation capillary and the HV electrode. Tests of these reservoirs integrated into a CE system show reproducible CE system operation with a variety of background electrolytes at voltages up to 25 kV. Rotation of the reservoirs, and the system, showed that their performance was independent of the direction of the gravity vector.     

Why do GroEL Ions Exhibit Two Gas Phase Conformers?

The reasons for the existence of two gas phase conformers for electrosprayed ions of the large tetradecameric protein complex GroEL are considered. Key features are that: (1) both conformers extrapolate to very similar cross sections in the limit of zero charge; (2) both conformers supercharge above the maximum value permitted by the Rayleigh criterion; and (3) one of the conformers supercharges substantially more than the other. We hypothesize that the supercharging observed is associated to the approximately cylindrical shape of GroEL in aqueous solution, enabling accumulation of extra charge on either one or two of its bases when they intersect the evaporating drop surface. The two conformers would then correspond to cases when either one or the two bases of the cylinder carry extra charge. Apparently, the conformer symmetrically (doubly) supercharged on both ends is Coulombically stretched, therefore exhibiting a mobility different from the conformer asymmetrically supercharged only on one end. Several general consequences follow. First, non-spherical proteins may generally be charged above the usual Rayleigh limit. Second, we confirm the previously advanced but contentious notion that gas phase protein ions are readily compacted or stretched away from their crystal structure by capillary and Coulombic forces during the electrospraying process.     

Suzuki cross-coupling reaction of fluorobenzene with heterogeneous palladium catalysts

In this work, we accomplished for the first time the Suzuki cross-coupling reaction between fluorobenzene and phenylboronic acid with different heterogeneous catalysts and bases. The conversion values obtained are similar to those provided by homogeneous catalysts and activated aryl fluorides.     

Ultracentrifugation Studies of Polyelectrolytes in Polyglucose Density Gradient

An ideal solute for density gradient ultracentrifugation of polymers in aqueous solution should be inert and readily soluble in water to form an extended range of solution densities of low viscosity. High molecular weight is an added attraction because osmotic effects are minimized. Highly branched spherical synthetic polysaccharides fulfill these requirements. High degree of branching is a consequence of the condensation of polyfunctional monomers. Density and relative viscosity of solutions of polyglucose, sucrose, and of a natural sucrose polymer, Ficoll, are compared. The behavior of various polyelectrolytes was studied in low viscosity polyglucose density gradients in equilibrium buoyant density measurement in the ultra-centrifuge. Macromolecules or macromolecular complexes attain low apparent equilibrium buoyant density, probably because of an excluded volume effect of the solute. This allows sedimentation to isopycnic position of complex biopolymers in inert polyglucose solutions, which otherwise can be attempted only in concentrated solutions of heavy salts (such as CsCI or Cs₂SO₄). Such salts, however, may salt out, or through osmotic effects degrade or alter the properties of certain biologic macromolecular complexes.     

Kinetics of small ion evaporation from the charge and mass distribution of multiply charged clusters in electrosprays

The distribution of charge z and radii R in clusters electrosprayed from formamide solutions of tetraheptylammonium bromide was investigated by selecting those within a narrow range of electrical mobilities Z(1) in a first differential mobility analyzer (DMA), reducing their charge to unity by passage through a neutralizing chamber containing a radioactive (alpha) source, and measuring the mobilities Z(z) of the resulting discrete set of singly charged clusters in a second DMA. After correcting for the polarization contribution to cluster drag, the tandem DMA data yield the range of radii present at detectable levels for each charge state up to z = 9. Because small ion evaporation from electrospray drops leads to charge loss when a drop reaches a certain critical radius R(crit)(z), the measured maximum and minimum cluster radii associated with a given z can be used to infer the activation energy Delta for ion evaporation as a function of drop charge and curvature. These results confirm the Iribarne-Thomson ion-evaporation mechanism, and support earlier theoretical expressions for the functional form of Delta(z,R). The different phenomenon of ion evaporation from metastable multiply charged dry clusters is also observed at characteristic times of 1 s. Its activation energy is estimated as approximately 0.3 eV larger than for ion evaporation from the drops. This new process complicates the interpretation of the present measurements in terms of ion evaporation from liquid surfaces, but introduces no radical change in the picture. It helps understand why salt clusters with more than two or three charges are harder to see in mass spectrometers than in mobility studies under ambient conditions. Copyright 2000 John Wiley & Sons, Ltd.     

Tandem mobility mass spectrometry study of electrosprayed tetraheptyl ammonium bromide clusters

Multiply charged electrospray ions from concentrated solutions of Heptyl4N+Br- (designated A+B- hereafter) in formamide are analyzed mass spectrometrically (MS) following mobility selection in ambient air in a differential mobility analyzer (DMA). Most of the sharp mobility peaks seen are identified as (AB)(n)A+ clusters, with 0 < or = n < ot = 5. One anomalously abundant and mobile ion is identified as NH4+(AB)4. Six ions in the (AB)n(A+)2 series are also identified, completing and correcting earlier mobility data for singly and doubly charged ions up to masses of almost 9000 Da. The more mobile of two broad humps seen in the mobility spectrum includes m/z values approximately from 2500 up to 12,000 Da. It is formed primarily by multiply charged (AB)n(A+)z clusters with multiple ammonium bromide adducts. Because of overlapping of many peaks of different m/z and charge state z, only a few individual species can be identified by MS alone in this highly congested region. However, the spectral simplification brought about by mobility selection upstream of the MS reveals a series of broad modulations in m/z space, with all ions resolved in the second, third, ...sixth modulation being in charge states z = 2, 3, ...6, respectively. Extrapolation of this trend beyond the sixth wave fixes the ion charge state (in some cases up to z = 15) and mass (beyond m = 175,000 u). This wavy structure had been previously observed and explained in terms of ion evaporation kinetics from volatile drops, though without mass identification. All observations indicate that the clusters are formed as charged residues, but their charge state is fixed by the Iribarne-Thomson ion evaporation mechanism. Consequently, the measured curve of cluster diameter versus z yields the two parameters governing ion evaporation kinetics. Clusters with z > 1 and electrical mobility Z > 0.495 cm2/V/s are metastable and evaporate a singly charged cluster, probably (AB)2A+, between the DMA and the MS. Plotting the electrical mobilities Z of the clusters in the form (z/Z)1/2 versus m(1/3) (both proportional to cluster diameter) collapse the data for all cluster sizes and charge states into one single straight line for Z below 0.495 cm2/V/s. This linear relation reveals a uniform apparent cluster density of 0.935 g/cm3 and an effective hard-sphere diameter of the air molecules of 0.44 nm. An anomalous mobility increase is observed at diameters below 3 nm.     

An Alkyne Diboration/6π‐Electrocyclization Strategy for the Synthesis of Pyridine Boronic Acid Derivatives

A new and efficient synthesis of pyridine‐based heteroaromatic boronic acid derivatives is reported through a novel diboration/6π‐electrocyclization strategy. This method delivers a range of functionalized heterocycles from readily available starting materials.     

Occurrence of butyltin compounds in marine sediments and bivalves from three harbour areas (Saigon,Da Nang and Hai Phong) in Vietnam

A survey of organotin compounds comprising tributyltin (TBT), dibutyltin (DBT) and monobutyltin (MBT) in sediment and clam (Meretrix meretrix) was undertaken in Vietnam in 2003. Samples were collected from dry docks and cargo harbours in Ho Chi Minh (south), Da Nang (centre) and Hai Phong (north) cities. Measurable amounts of TBT, DBT and MBT were found in all samples. The total concentration of the butyltin compounds (ΣBTs) in sediment from shipyards and vessel repair yards (Nam Trieu, Song Cam, Lach Tray and Ba Son) were always higher than those measured in cargo ports (Hai Phong, Da Nang, and Sai Gon). The highest ΣBTs concentration (as tin: 122 ng g^?1 dry wt) was found in the sediment from Song Cam station, where seven shipyards are located. The lowest concentrations of ΣBTs occurred in sediments from the Da Nang and Hai Phong cargo ports (as tin: 21–22 ng g^?1 dry wt). This implies that the major source of BTs in the marine environment in Vietnam is from the shipbuilding activities. The ratio of TBT to Σ(MBT + DBT) in sediment was 0.67 ± 0.03 for all the sampling sites, indicating the recent use of TBT in Vietnam. For the clam (M. meretrix), the concentration of ΣBTs (as tin) varied in the range 11.2–60.1 ng g^?1 wet wt. There was a good correlation (R² = 0.85) between total organic matter‐normalized ΣBTs in sediment and hexane‐extractable organic matter‐normalized ΣBTs in clam soft tissue. The mean biota–sediment accumulation factors (organic carbon/lipid) for MBT, DBT and TBT in clam's soft tissue were found to be 1.83 ± 0.66, 1.44 ± 0.23 and 1.16 ± 0.47 respectively, indicating that sediment‐bound BTs might be an important source of contamination for the clam. Copyright © 2005 John Wiley & Sons, Ltd.