A phosphotyrosine-imprinted polymer receptor for the recognition of tyrosine phosphorylated peptides

Hyperphosphorylation at tyrosine is commonly observed in tumor proteomes and, hence, specific phosphoproteins or phosphopeptides could serve as markers useful for cancer diagnostics and therapeutics. The analysis of such targets is, however, a challenging task, because of their commonly low abundance and the lack of robust and effective preconcentration techniques. As a robust alternative to the commonly used immunoaffinity techniques that rely on phosphotyrosine(pTyr)-specific antibodies, we have developed an epitope-imprinting strategy that leads to a synthetic pTyr-selective imprinted polymer receptor. The binding site incorporates two monourea ligands placed by preorganization around a pTyr dianion template. The tight binding site displayed good binding affinities for the pTyr template, in the range of that observed for corresponding antibodies, and a clear preference for pTyr over phosphoserine (pSer). In further analogy to the antibodies, the imprinted polymer was capable of capturing short tyrosine phosphorylated peptides in the presence of an excess of their non-phosphorylated counterparts or peptides phosphorylated at serine.     

Surface plasmon resonance for real-time study of lectin-carbohydrate interactions for the differentiation and identification of glycoproteins

A study of specific interactions between lectins and glycoproteins has been carried out using surface plasmon resonance (SPR) in a flow-injection mode. Lectins were covalently immobilised on the surfaces of the microfluidic sensor chip via amine coupling and serum glycoproteins were injected into the flow channels. Specific lectin-glycoprotein interactions caused the shift of refractive index proportional to the mass concentration accumulated on the channel surface. Lectins showed different affinity to the tested glycoproteins and each glycoprotein displayed its own lectin-binding pattern. It is possible to distinguish and identify even glycoproteins with similar sugar structures by simple and quick screening. The working conditions of the assay were optimised. The lectin-based SPR made it possible to carry out the label-free detection of glycoproteins within a broad concentration range with a good linearity. Regeneration conditions for the surface of the sensor chip were found and optimised. Combination of 10 mM HCl and 10 mM glycine-HCl (pH 2.5) removes the bound glycoproteins from the lectin surface without damaging it. The kinetic and affinity parameters of lectin-glycoprotein binding were evaluated. The proposed method was tested on human glycosylated serum. Combination of the lectin panel with SPR is suitable both for specific screening and for sensitive assay of serum glycoproteins.     

Synthesis, characterization and optical band gap of NiO nanoparticles derived from anthranilic acid precursors via a thermal decomposition route

This study focuses on the preparation and characterization of single phase NiO nano particles. Four nickel anthranilic acid complexes were synthesized by the semi-solid phase reaction method as precursors for the preparation of NiO nanoparticles via a solid-state decomposition procedure at 700 °C. Thermogravimetric analysis (TGA) was applied to determine the thermal behavior of the precursors and the temperature at which the precursors decompose leaving the oxide. The crystalline structures of the products were investigated by X-ray diffraction (XRD), the morphology of particles by SEM and TEM. The particles size was determined by STM, and the average particle size was found to be 8 nm. Electronic spectra were used to clarify qualitatively the change in absorption band positions on changing the particle size of NiO. The optical band gap of the NiO nanoparticles was calculated and indicated a direct transition. The values of the optical band gap of NiO nanoparticles increase as the particle size decreases.     

Clarification of the oxidation state of cobalt corroles in heterogeneous and homogeneous catalytic reduction of dioxygen

Co(III) corroles were investigated as efficient catalysts for the reduction of dioxygen in the presence of perchloric acid in both heterogeneous and homogeneous systems. The investigated compounds are (5,10,15-tris(pentafluorophenyl)corrole)cobalt (TPFCor)Co, (10-pentafluorophenyl-5,15-dimesitylcorrole)cobalt (F 5PhMes 2Cor)Co, and (5,10,15-trismesitylcorrole)cobalt (Mes 3Cor)Co, all of which contain bulky substituents at the three meso positions of the corrole macrocycle. Cyclic voltammetry and rotating ring-disk electrode voltammetry were used to examine the catalytic activity of the compounds when adsorbed on the surface of a graphite electrode in the presence of 1.0 M perchloric acid, and this data is compared to results for the homogeneous catalytic reduction of O 2 in benzonitrile containing 10 (-2) M HClO 4. The corroles were also investigated as to their redox properties in nonaqueous media. A reversible one-electron oxidation occurs at E 1/2 values between 0.42 and 0.89 V versus SCE depending upon the solvent and number of fluorine substituents on the compounds, and this is followed by a second reversible one-electron abstraction at E 1/2 = 0.86 to 1.18 V in CH 2Cl 2, THF, or PhCN. Two reductions of each corrole are also observed in the three solvents. A linear relationship is observed between E 1/2 for oxidation or reduction and the number of electron-withdrawing fluorine groups on the compounds, and the magnitude of the substituent effect is compared to what is observed in the case of tetraphenylporphyrins containing meso -substituted C 6F 5 substituents. The electrochemically generated forms of the corrole can exist with Co(I), Co(II), or Co(IV) central metal ions, and the site of the electron-transfer in each oxidation or reduction of the initial Co(III) complex was examined by UV-vis spectroelectrochemistry. ESR characterization was also used to characterize singly oxidized (F 5PhMes 2Cor)Co, which is unambiguously assigned as a Co(III) radical cation rather than the expected Co(IV) corrole with an unoxidized macrocyclic ring.     

Ethnobotanical study of some aromatic and medicinal plants in the Middle Atlas mountains of Morocco

By the diversity of its soil and climatic factors, Morocco offers a flora particularly rich in aromatic and medicinal plants (MAP). In order to obtain the most information about the flora (flowering times, fruiting, harvesting and their main uses in traditional medicine), a study was conducted in the mountainous Khenifra region. A survey of users of MAP (rural population, herbalists arborists) has been undertaken and was completed by field observations and sampling at different stages of growth. The results showed a range of indigenous and diversified MAP belonging to 10 botanical families (Lamiaceae, Asteraceae, Rosaceae, Chenopodiaceae, Papaveraceae, Caryophyllaceae, Cupressaceae, Rutaceae, Anacardiaceae and Zygophyllaceae). The flowering period of all species, according to the local community surveyed, spread from February (2%) to September (12%), with a significant concentration from April to June (65%).The highest rate of fructification occurred in June-July (64%). The harvesting period of the main MAP from this mountain area stretches mainly from March to April (61%). The mode of propagation stated varied among species, and concerned mainly replication by seeds (53%) and cuttings (24%). Regarding the use of these indigenous MAP as traditional medicines, all plant parts are used, especially leaves, flowers and stems.     

UV‐curing synthesis of sulfonated polyaniline‐silver nanocomposites by an in situ reduction method

Sulfonated polyaniline‐silver (SPAni‐Ag) hybrid nanocomposites have been synthesized by the in situ reduction using a UV‐curing polymerization method without using any reducing or binding agent. An aqueous solution of aniline and orthoanilinic acid (OA) comonomers, a free‐radical oxidant and silver metal salts were irradiated by UV rays. Reduction of the silver salt in aqueous aniline and OA leads to the formation of silver particles which in turn catalyze the oxidation of comonomers to sulfonated polyaniline (SPAni). The resultant SPAni‐Ag nanocomposites were characterized by using different spectroscopy analyses like UV–visible (UV–Vis), X‐ray diffraction (XRD) and infrared spectroscopy. The absorption bands were revealed to be optically active and the peaks blue‐shifted due to the presence of metallic silver within the SPAni matrix. The XRD patterns displayed both the broad amorphous polymeric and sharp metallic peaks. Scanning electron microscopy and transmission electron microscopy of the nanocomposites showed a uniform size distribution with spherical and granular morphology. Thermogravimetric analysis revealed that the nanocomposites had a better thermal stability than the bulk SPAni. Copyright © 2008 John Wiley & Sons, Ltd.     

Phosphopeptide fragmentation and analysis by mass spectrometry

Reversible phosphorylation is a key event in many biological processes and is therefore a much studied phenomenon. The mass spectrometric (MS) analysis of phosphorylation is challenged by the substoichiometric levels of phosphorylation and the lability of the phosphate group in collision‐induced dissociation (CID). Here, we review the fragmentation behaviour of phosphorylated peptides in MS and discuss several MS approaches that have been developed to improve and facilitate the analysis of phosphorylated peptides. CID of phosphopeptides typically results in spectra dominated by a neutral loss of the phosphate group. Several proposed mechanisms for this neutral loss and several factors affecting the extent at which this occurs are discussed. Approaches are described to interpret such neutral loss‐dominated spectra to identify the phosphopeptide and localize the phosphorylation site. Methods using additional activation, such as MS³ and multistage activation (MSA), have been designed to generate more sequence‐informative fragments from the ion produced by the neutral loss. The characteristics and benefits of these methods are reviewed together with approaches using phosphopeptide derivatization or specific MS scan modes. Additionally, electron‐driven dissociation methods by electron capture dissociation (ECD) or electron transfer dissociation (ETD) and their application in phosphopeptide analysis are evaluated. Finally, these techniques are put into perspective for their use in large‐scale phosphoproteomics studies. Copyright © 2009 John Wiley & Sons, Ltd.     

A Stability-Indicating Assay of Brimonidine Tartrate Ophthalmic Solution and Stress Testing Using HILIC

A stability-indicating hydrophilic interaction liquid chromatography (HILIC) method has been developed and validated for the quantitative determination of Brimonidine tartrate (BT) formulated as an ophthalmic solution. Isocratic separation was achieved using an acetonitrile-buffer mixture (92:8, v/v) at pH 7.1 on an unmodified silica column (250 × 4.6 mm, 5 μm). The drug was subjected to oxidative, hydrolytic, photolytic and thermal stress conditions and complete separation was achieved for the parent compound and degradation products. The influence of acetonitrile, pH and ionic strength of the buffer was studied. Linearity range and recoveries for BT were 100–400 μg mL^?1 and 100.12%, respectively. The method was validated for BT and indicated that the method was sufficiently sensitive with a limit of detection at 0.005 μg mL^?1 and a limit of quantitation at 0.02 μg mL^?1, respectively.     

Exploring the Limits of Förster Theory for Energy Transfer at a Separation of 20 Å

Cutting the corner : An excellent agreement has been obtained between experimental and computed coulombic coupling matrix elements for donor–spacer–acceptor systems, which consist of a boron dipyrromethane donor and acceptor in various stages of protonation. This correlation occurs in spite of reservations about the validity of Förster theory being applied to intramolecular electronic energy transfer (ET) over short (e.g., 20 Å) distances (see picture).

     

A study of metals supported on active carbon with a temperature programmed reduction (TPR) technique

The influence of active carbon as support on the reducibility of supported metals (Ni, Cu, Cd, Zn) has been studied by means of a temperature programmed reduction (TPR) technique. The TPR profiles indicate that active carbon behaves as a dispersion agent and the supported metal is dispersed in a disordered phase rather than as a stoichiometric compound. The hydrogen consumed in the reduction indicates that the metal residues are present in monovalent and divalent forms. High-temperature reduction peaks were also observed and are explained on the basis of metal-surface interactions and the porosity of the active carbon. Nitrogen adsorption reveals that the active carbon porosity decreases due to progressive closure of the pores when metals are supported on the surface of active carbon.