Compact multipolar representation of the electrostatic potential for flexible molecules

A new method for generating a compact multipolar representation of the electrostatic potential (EP) for flexible molecules is presented. The method is based on a constrained minimization of the difference between the quantum mechanical and the classical EP. The fitting procedure used adopts the least absolute shrinkage and selection operator technique [R. Tibshirani, J. Roy. Stat. Soc. B 58, 267 (1996)] which can be seen as penalized ordinary least squares. The penalty function optimized for the particular molecule of interest effectively removes redundant multipoles. It is shown that the use of multiple conformations is crucial for the predictive ability of the EP model for flexible molecules. The multipole local coordinate systems are chosen in a way that best reflects the key conformational changes. It was demonstrated that such an approach improves the predictive ability of EP models. It also allows to exploit equivalence of atoms in the calculation of multipoles components. In the case of polar flexible molecules, the augmentation of the EP model based on charges by higher multipoles decreases the relative root mean square error by a factor of 1.5-5. The corresponding effect of enlargement of the set of multipoles was significantly reduced.     

Multiplexed hybridizations of positively charge-tagged peptide nucleic acids detected by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

Peptide nucleic acid (PNA) is a novel class of DNA analogues in which the entire sugar-phosphate backbone is replaced by a pseudopeptide counterpart. Owing to its neutral character and the consequent lack of electrostatic repulsion, PNA exhibits very stable heteroduplex formation with complementary nucleic acid that is essentially ionic strength independent and enables hybridization under minimum salt conditions. This feature as well as its superior ion stability and easy ionization compared to DNA renders PNA very attractive for hybridization-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOFMS) applications. We have developed an approach to DNA characterization that takes advantage of multiplexed PNA hybridizations analyzed by MALDI-TOFMS. Our motivation was the further development of oligonucleotide fingerprinting, an efficient technique for cDNA and genomic DNA library characterization. Through positive 'charge-tagging' of PNA the efficiency of detection in MALDI-TOFMS was considerably enhanced permitting an unparalleled degree of multiplexing. Results from the simultaneous hybridization of 21 charge-tagged PNA hexamer oligonucleotides showed that genomic DNA and cDNA clones are successfully characterized on the basis of their hybridization profiles. The degree of multiplexing achieved may render a significant increase in throughput and hence efficiency of oligonucleotide fingerprinting possible.     

Square-Planar Nickel(II) O,O′-Dialkyldithiophosphato Complexes with Triphenylphosphine of the Type [NiX(S2P{OR}2)(PPh3)] (X = Cl,Br, I and NCS)

A series of new [NiX(S₂P{O-c-Hex}₂)(PPh₃)](X = Cl^–, Br^–, I^– and NCS^–)(1)–(4) and [Ni(NCS)(S₂P{OR}₂)(PPh₃)][R =n-Pr (5), i-Pr (6)] complexes has been synthesized and characterized by elemental analyses, f.i.r., i.r., u.v.–vis., ¹H-, ¹³C{¹H}- and ³¹P{¹H}-n.m.r. spectra, magnetochemical and conductivity measurements. A single crystal X-ray analysis of [Ni(NCS)(S₂P{O-n-Pr}₂)(PPh₃)](5) reveals the molecular structure of the complex and confirms a square-planar geometry around the central atom of nickel with the NCS anion coordinated via the nitrogen atom.     

Search on ruggedness of fast gas chromatography-mass spectrometry in pesticide residues analysis

In this study, suitability of fast gas chromatography-mass spectrometry (GC-MS) on a narrow-bore column with a programmed temperature vaporizer for the analysis of pesticide residues in non-fatty food was evaluated. The main objectives were ruggedness and stability of chromatographic system with regards to co-extractives injected. The chromatographic matrix induced response enhancement was found to be strongly dependent on the concentration of residues and is reaching up to 700% compared to the pesticides solutions in a neat solvent. However, the responses of pesticides in matrix-matched standards at different concentration levels do not significantly change during 130 injections. Response enhancement/or decrease is influenced by the sample preparation technique. External calibration with matrix-matched calibration standards should, therefore, provide results with good precision also at the concentration level of 0.005 mg kg(-1). Special attention is given to the performance of the chromatographic column and retention gap with regards to peak widths, peak tailing and different sample preparation methods. During approximately 460 matrix sample injections, the performance of the analytical column was acceptable. GC-MS set-up with 0.15 mm i.d. column can be successfully utilized for the pesticide residues analysis.     

Ethylenediaminetetraacetato-monoperoxo complexes of vanadium(V)

Summary The monoperoxo complexes, M₂[VO(HEDTA)(O₂)]· 4H₂O, where M is K⁺ or NH ₄ ⁺ and H₄EDTA is ethylene-diaminetetraacetic acid, were prepared and characterized by Raman and i.r. spectra in the solid state and in aqueous solution. The single crystal X-ray study revealed a pentagonal bipyramidal anion structure with a tetradentate HEDTA(3—) ligand. The decomposition of complexes in aqueous solution to blue vanadium(IV) complexes as end products proceeds via a nonperoxo complex of vanadium.     

Organotransition-Metal Metallacarboranes. 46. Multidecker Sandwiches of the Cobalt Group Metals(,)(1)

The double-decker sandwich complex CpIr(2,3-Et(2)C(2)B(4)H(4)) (1a) was prepared via deprotonation of nido-2,3-Et(2)C(2)B(4)H(6) to its mono- or dianion and reaction with (CpIrCl(2))(2) in THF and isolated as a colorless air-stable solid; the B(4)-chloro derivative 1b was also obtained. Decapitation of 1a and 1b with TMEDA afforded colorless nido-CpIr(2,3-Et(2)C(2)B(3)H(5)) (2a) and its 4-chloro derivative 2b. Chlorination of 1a by Cl(2) or N-chlorosuccinimide gave the symmetrical species CpIr(2,3-Et(2)C(2)B(4)H(3)-5-Cl) (1c), which was decapped to yield nido-CpIr(2,3-Et(2)C(2)B(3)H(4)-5-Cl) (2c). The triple-decker complexes CpIr(2,3-Et(2)C(2)B(3)H(2)-4[6]-Cl)IrCp (3), an orange solid, and dark green CpIr(2,3-Et(2)C(2)B(3)H(2)-4[6]-Cl)CoCp (5) were prepared from 2a and nido-CpCo(2,3-Et(2)C(2)B(3)H(5)) (4a), respectively, by deprotonation and reaction with (CpIrCl(2))(2) in THF. Reaction of the 2c(-) anion with Rh(MeCN)(3)Cl(3) gave the dark green tetradecker complex [CpIr(Et(2)C(2)B(3)H(2)-5-Cl)](2)RhH (6). In an attempt to prepare a heterotrimetallic Co-Rh-Ir tetradecker sandwich, a three-way reaction involving the deprotonated anions derived from CpCo(2,3-Et(2)C(2)B(3)H(4)-5-Cl) (4b) and 2c with Rh(MeCN)(3)Cl(3) was conducted. The desired species CpCo(Et(2)C(2)B(3)H(2)Cl)RhH(Et(2)C(2)B(3)H(2)Cl)IrCp (7) and the tetradeckers [CpCo(Et(2)C(2)B(3)H(2)Cl)](2)RhH (8) and 6 were isolated in small quantities from the product mixture; many other apparent triple-decker and tetradecker products were detected via mass spectroscopy but were not characterized. All new compounds were isolated via column or plate chromatography and characterized via NMR, UV-visible, and mass spectroscopy and by X-ray crystal structure determinations of 1a and 3. Crystal data for 1a: space group C2/c; a = 28.890(5) ?, b = 8.511(2) ?, c = 15.698(4) ?, beta = 107.61(2) degrees; Z = 8; R = 0.049 for 1404 independent reflections having I > 3sigma(I). Crystal data for 3: space group P2(1)/c; a = 11.775(4) ?, b = 15.546(5) ?, c = 15.500(5) ?, beta = 103.16(3) degrees; Z = 4; R = 0.066 for 2635 independent reflections having I > 3sigma(I).     

Synthese und Charakterisierung von Aquapentachloroplatinaten(IV) – Struktur von [K(18-Krone-6)][PtCl5(H2O)]

Synthesis and Characterization of Aquapentachloroplatinates(IV) – Structure of [K(18-crown-6)][PtCl₅(H₂O)] The crown ether complex of the aquapentachloroplatinic acid of the composition [H₁₃O₆][PtCl₅(H₄O₂)] · 2(18-cr-6) ( 2 ) reacts with K₂CO₃ and [NⁿBu₄]OH in aqueous solution to give [K(18-cr-6)][PtCl₅(H₂O)] ( 5 a ) and [NⁿBu₄][PtCl₅(H₂O)] · ¹/₂ (18-cr-6) · H₂O ( 5 b ), respectively. Both compounds were characterized by microanalysis, vibrational (IR, Raman) and NMR (¹H, ¹³C, ¹⁹⁵Pt) spectroscopy. The X-ray structure analysis of 5 a (orthorhombic, pnma; a = 16,550(4), b = 18,044(3), c = 7,415(1) Å; Z = 4; R1 = 0,0183; wR2 = 0,0414) reveals that the crystal is threaded by chains built up of [PtCl₅(H₂O)]^? and [K(18-cr-6)]⁺ units. There are tight K …? Cl contacts (d(K? Cl1)) = 3,0881(9) Å and O_W? H? O_cr hydrogen bridges (d(O1 …? O2) = 2,806(3) Å) between these units. The coordination polyhedron [PtCl₅O] has approximately C_4v symmetry.     

Facile and efficient synthesis of 6-(hydroxymethyl)purines

[reaction: see text] A facile and efficient methodology of the synthesis of 6-(hydroxymethyl)purine derivatives (bases and nucleosides) was developed based on Pd-catalyzed cross-coupling reactions of 6-halopurines with acyloxymethylzinc iodides followed by deprotection. Several title compounds are inhibitors of adenosine deaminase and exert cytostatic activity.