Biopolymer and carbon nanotubes interface prepared by self-assembly for studying the electrochemistry of microperoxidase-11

Stable films of biopolymer chitosan and carbon nanotubes were prepared by a layer-by-layer self-assembly technique. Atomic force microscopy, scanning electron microscopy, cyclic voltammetry, and UV-vis spectroscopy were used to characterize the film assembly. Atomic force microscopy and scanning electron microscopy showed that an even, stable film was formed. The UV-vis spectroscopy and cyclic voltammetry study indicated the uniform growth of the film. The property of the self-assembled multilayer film in promoting protein electron transfer was demonstrated by incorporating microperoxidase-11 in the film. Microperoxidase-11 in the multilayer film could transfer electrons with the electrode indicating that carbon nanotubes could wire the protein to the electrode. The electrocatalytic activity of the microperoxidase-11 containing multilayer film-modified electrode toward H(2)O(2) and O(2) was investigated. The results showed that along with the increase in the assembled layers the electrocatalytic reduction potentials of H(2)O(2) and O(2) shifted positively. The prepared multilayer film of chitosan and carbon nanotubes containing protein was a sensitive interface for electrocatalytic study.     

Biosorption of copper(II) and zinc(II) from aqueous solution by Pseudomonas putida CZ1

To study Pseudomonas putida CZ1, having high tolerance to copper and zinc on the removal of toxic metals from aqueous solutions, the biosorption of Cu(II) and Zn(II) by living and nonliving P. putida CZ1 were studied as functions of reaction time, initial pH of the solution and metal concentration. It was found that the optimum pH for Zn(II) removal by living and nonliving cells was 5.0, while it was 5.0 and 4.5, respectively, for Cu(II) removal. At the optimal conditions, metal ion biosorption was increased as the initial metal concentration increased. The adsorption data with respect to both metals provide an excellent fit to the Langmuir isotherm. The binding capacity of living cells is significantly higher than that of nonliving cells at tested conditions. It demonstrated that about 40-50% of the metals were actively taken up by P. putida CZ1, with the remainder being passively bound to the bacterium. Moreover, desorption efficiency of Cu(II) and Zn(II) by living cells was 72.5 and 45.6% under 0.1M HCl and it was 95.3 and 83.8% by nonliving cells, respectively. It may be due to Cu(II) and Zn(II) uptake by the living cells enhanced by intracellular accumulation.     

Mechanistic evaluation of arsenite oxidation in TiO2 assisted photocatalysis

We report herein a detailed assessment of the roles of O2, H2O2, *OH, and O2-* in the TiO2 assisted photocatalytic oxidation (PCO) of arsenite. Although both arsenite, As(III), and arsenate, As(V), adsorb extensively onto the surface of TiO2, past studies relied primarily on the analysis of the arsenic species in solution, neglecting those adsorbed onto the surface of TiO2. We used extraction and analyses of the arsenic species adsorbed onto the surface of the TiO2 to illustrate that the oxidation of As(III) to As(V) occurs in an adsorbed state during TiO2 PCO. The TiO2 photocatalytic oxidation (PCO) of surface adsorbed As(III) in deoxygenated solutions with electron scavengers, Cu2+, and polyoxometalates (POM) yields oxidation rates that are comparable to those observed under oxygen saturation, implying the primary role of oxygen is as a scavenger of the conduction band electron. Pulse radiolysis and competition kinetics were employed to determine a rate constant of 3.6 x 10(6) M(-1) s(-1) for the reaction of As(III) with O2-*. Transient absorption studies of adsorbed hydroxyl radicals, generated by subjecting colloidal TiO2 to radiolytic conditions, provide convincing evidence that the adsorbed hydroxyl radical (TiO2+*OH) plays the central role in the oxidation with As(III) during TiO2 assisted photocatalysis. Our results suggest the reaction of superoxide anion radical does not contribute in the conversion of As(III) when compared to the reaction of As(III) with *OH radical during TiO2 PCO.     

Improved synthesis of functionalized 5,6-dihydro-pyrimido[4,5-b][1,4]oxazepines

Novel synthetic approaches toward 5,6-dihydro-pyrimido[4,5-b][1,4]oxazepines were reported that led to successful introduction of poorly reactive anilines and various 2-hydroxybenzaldehydes to this therapeutically relevant scaffold. More extensive SAR studies on this scaffold hence became possible.     

Assessment of phenomenological models for viscosity of liquids based on nonequilibrium atomistic simulations of copper

The shear viscosity of liquid copper is studied using nonequilibrium molecular-dynamics simulations under planar shear flow conditions. We examined variation of viscosity as function of shear rate at a range of pressures (ca. 0 - 40 GPa). We analyzed these results using eight different phenomenological models and find that the observed non-Newtonian behavior is best described by the Powell-Eyring (PE) model: eta(gamma) = (eta(0)-eta(infinity))sinh(-1)(taugamma)(taugamma) + eta(infinity), where gamma is the shear rate. Here eta(0) (the zero-shear-rate viscosity) extracted from the PE fit is in excellent agreement with available experimental data. The relaxation time tau from the PE fit describes the shear response to an applied stress. This provides the framework for interpreting the shear flow phenomena in complex systems, such as liquid metal and amorphous metal alloys.     

Accurate prediction for electron affinities of the radicals derived from the halide benzene

The molecular structures and electron affinities of eight radicals derived from the halide benzene by removing a hydrogen atom have been determined using seven hybrid Hartree-Fock/density-functional methods. The basis set used in this work is of double-zeta plus polarization quality with additional diffuse s- and p-type functions, denoted as DZP++. These methods have been carefully calibrated [J. C. Rienstra-Kiracofe, G. S. Tschumper, H. F. Schaefer, S. Nandi, and G. B. Ellison, Chem. Rev. (Washington, D. C.) 102, 231 (2002)]. The geometries are fully optimized with each density-functional theory method and discussed, respectively. The three different types of the neutral-anion energy separations reported in this work are the adiabatic electron affinity, the vertical electron affinity, and the vertical detachment energy. The most reliable adiabatic electron affinities (with zero-point vibrational energy correction), obtained at the DZP++ B3LYP level of theory, are 1.74 eV (o-C6H4F), 1.39 eV (m-C6H4F), 1.34 eV (p-C6H4F), 1.78 eV (o-C6H4Cl), 1.53 eV (m-C6H4Cl), 1.45 eV (p-C6H4Cl), 2.06 eV (o-C6H3F2), and 2.04 eV (p-C6H3F2), respectively. Compared with the experimental values, the average absolute error of the B3LYP method is 0.03 eV. The BLYP, BP86, and BPW91 functionals also gave excellent predictions, with average absolute errors of 0.05, 0.08, and 0.08 eV, respectively.     

Silicon monohydride clusters Si(n)H (n = 4-10) and their anions: structures, thermochemistry, and electron affinities

The molecular structures, electron affinities, and dissociation energies of the Si(n)H/Si(n)H- (n = 4-10) species have been examined via five hybrid and pure density functional theory (DFT) methods. The basis set used in this work is of double-zeta plus polarization quality with additional diffuse s- and p-type functions, denoted DZP++. The geometries are fully optimized with each DFT method independently. The three different types of neutral-anion energy separations presented in this work are the adiabatic electron affinity (EA(ad)), the vertical electron affinity (EA(vert)), and the vertical detachment energy (VDE). The first Si-H dissociation energies, D(e)(Si(n)H --> Si(n) + H) for neutral Si(n)H and D(e)(Si(n)H- --> Si(n)- + H) for anionic Si(n)H- species, have also been reported. The structures of the ground states of these clusters are traditional H-Si single-bond forms. The ground-state geometries of Si5H, Si6H, Si8H, and Si9H predicted by the DFT methods are different from previous calculations, such as those obtained by Car-Parrinello molecular dynamics and nonorthogonal tight-binding molecular dynamics schemes. The most reliable EA(ad) values obtained at the B3LYP level of theory are 2.59 (Si4H), 2.84 (Si5H), 2.86 (Si6H), 3.19 (Si7H), 3.14 (Si8H), 3.36 (Si9H), and 3.56 (Si10H) eV. The first dissociation energies (Si(n)H --> Si(n) + H) predicted by all of these methods are 2.20-2.29 (Si4H), 2.30-2.83 (Si5H), 2.12-2.41 (Si6H), 1.75-2.03 (Si7H), 2.41-2.72 (Si8H), 1.86-2.11 (Si9H), and 1.92-2.27 (Si10H) eV. For the negatively charged ion clusters (Si(n)H- --> Si(n)- + H), the dissociation energies predicted are 2.56-2.69 (Si4H-), 2.80-3.01 (Si5H-), 2.86-3.06 (Si6H-), 2.80-3.03 (Si7H-), 2.69-2.92 (Si8H-), 2.92-3.18 (Si9H-), and 2.89-3.25 (Si10H-) eV.     

Remarkable nanosize effect of zirconia in Au/ZrO2 catalyst for CO oxidation

Nanosize effect of ZrO2 in Au/ZrO2 catalyst was studied by deposition-precipitation of Au nanoparticles in similar sizes (4-5 nm) on ZrO2 nanoparticles of varying sizes. The catalysts were characterized with XRD, TEM, XPS, and nitrogen adsorption to understand the effect of ZrO2 particle size on the catalytic nanostructures. Nanocomposite Au/ZrO2 catalysts consisting of comparably sized Au-metal (4-5 nm) and ZrO2 (5-15 nm) nanoparticles are found advantageous over those containing similarly sized Au-metal but larger ZrO2 (40-200 nm) particles for CO oxidation. This finding may have important implications on the designed preparation of advanced nanostructured catalysts and other chemical materials.     

Complete NMR assignments of the antibacterial biflavonoid GB1 from Garcinia kola

From the antibacterial fraction of the roots of Garcinia kola, 3',4',4',5,5',7,7'-heptahydroxy-3,8'-biflavanone (GB1) was isolated as the major constituent, whose interesting conformations were studied on the basis of its 1D and 2D NMR spectra obtained at different temperatures and in different solvents. GB1 showed antibacterial activities against methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant enterococci (VRE) with MIC of 32 and 128 microg/ml, respectively.     

A general strategy for the assignment of aliphatic side-chain resonances of uniformly 13C,15N-labeled large proteins

A general strategy is proposed to assign aliphatic side-chain resonances of large 13C,15N-labeled proteins without deuteration, using 4D 13C,15N-edited NOESY and MQ-(H)CCH-TOCSY experiments on the basis of prior assignments of backbone and 13Cbeta resonances. The strategy has been tested on a 214 residue protein (DdCAD-1) and applied to a chain-selectively 13C,15N-labeled hemoglobin (65 kDa). About 96 and 80% aliphatic side-chain spins in DdCAD-1 and hemoglobin have been assigned, respectively. The strategy proposed here will be very useful for the structure determination and dynamics characterization of large proteins by NMR.