Structural aspects of antibody-antigen interaction revealed through small random peptide libraries

Summary Two small random peptide libraries, one composed of 4550 dodecapeptides and one of 8000 tripeptides, were synthesized in newly developed credit-card format miniPEPSCAN cards (miniPEPSCAN libraries). Each peptide was synthesized in a discrete well (455 peptides/card). The two miniPEPSCAN libraries were screened with three different monoclonal antibodies (Mabs). Two other random peptide libraries, expressed on the wall of bacteria (recombinant libraries) and composed of 10⁷ hexa- and octapeptides, were screened with the same three Mabs. The aim of this study was to compare the amino acid sequence of peptides selected from small and large pools of random peptides and, in this way, investigate the potential of small random peptide libraries. The screening of the two miniPEPSCAN libraries resulted in the identification of a surprisingly large number of antibody-binding peptides, while the screening of the large recombinant libraries, using the same Mabs, resulted in the identification of only a small number of peptides. The large number of peptides derived from the small random peptide libraries allowed the determination of consensus sequences. These consensus sequences could be related to small linear and nonlinear parts of the respective epitopes. The small number of peptides derived from the large random peptide libraries could only be related to linear epitopes that were previously mapped using small libraries of overlapping peptides covering the antigenic protein. Thus, with respect to the cost and speed of identifying peptides that resemble linear and nonlinear parts of epitopes, small diversity libraries based on synthetic peptides appear to be superior to large diversity libraries based on expression systems.Abbreviations ABTS 2,2-azino-di-3-ethylbenzthiazoline sulfonate - EGF epidermal growth factor - Mab monoclonal antibody - OD_ccd optical density obtained using CCD camera - RAMPO rabbit-antimouse peroxidase - SDS sodium dodecylsulfate - TGEV transmissible gastroenteritis virus     

Propagating fronts,chaos and multistability in a cell replication model

Numerical solutions to a model equation that describes cell population dynamics are presented and analyzed. A distinctive feature of the model equation (a hyperbolic partial differential equation) is the presence of delayed arguments in the time (t) and maturation (x) variables due to the nonzero length of the cell cycle. This transport like equation balances a linear convection with a nonlinear, nonlocal, and delayed reaction term. The linear convection term acts to impress the value of u(t,x=0) on the entire population while the death term acts to drive the population to extinction. The rich phenomenology of solution behaviour presented here arises from the nonlinear, nonlocal birth term. The existence of this kinetic nonlinearity accounts for the existence and propagation of soliton-like or front solutions, while the increasing effect of nonlocality and temporal delays acts to produce a fine periodic structure on the trailing part of the front. This nonlinear, nonlocal, and delayed kinetic term is also shown to be responsible for the existence of a Hopf bifurcation and subsequent period doublings to apparent "chaos" along the characteristics of this hyperbolic partial differential equation. In the time maturation plane, the combined effects of nonlinearity, nonlocality, and delays leads to solution behaviour exhibiting spatial chaos for certain parameter values. Although analytic results are not available for the system we have studied, consistency and validation of the numerical results was achieved by using different numerical methods. A general conclusion of this work, of interest for the understanding of any biological system modeled by a hyperbolic delayed partial differential equation, is that increasing the spatio-temporal delays will often lead to spatial complexity and irregular wave propagation. (c) 1996 American Institute of Physics.     

Radiotracer measurement of the volatilization of organic trace constituents from water

Abstract The mass-transfer coefficient for the volatilization of organic microconstituents from water can be determined by laboratory radiotracer experiments. Formulation and practical aspects are considered and illustrated by the example of a 5.10(-7) M solution of monochlorobenzene.     

Laser action below threshold inversion due to coherent population trapping

The possibility of lasing without inversion on the 1079.8 nm line of a HeNe laser is investigated. It is shown that a modified double- scheme can be realized by use of the 877.9 nm line for introducing Zeeman coherence. It is shown experimentally that Zeeman coherence can enforce laser action, even if the inversion is below threshold. A different choice of the polarization of the driving beam can result in suppression of laser action above threshold. The underlying mechanisms are examined. On the 611.8 nm line, laser action below threshold inversion is obtained with the driving beam tuned to 824.9 nm (up-conversion).     

Aluminium electron-phonon relaxation-time measurement from subpicosecond nonlinear single-photon photoelectric emission at 248 nm

The sensitivity of photoelectric emission of polycrystalline aluminium, produced by 248 nm laser pulses with p-polarization and 450 fs duration, under incidence angles = 74–86°, has been measured. A nonlinear increase of photoemission efficiency, as a function of the incident laser peak intensity in the range of 1–50 GW/cm², was displayed, which confirms earlier observations with gold and tungsten. This nonlinearity is consecutive to the non-thermal distribution of electron gas of laser-heated metal on the time scale of the electron-phonon relaxation time. Analysis of experimental data, using the model previously developed by us [1], gives a value of electron-phonon relaxation time 0.55 ± 0.11 ps.     

The dilution of silica in a NiZnCo spinel ferrite matrix

Silica may dissolve up to about 0.05 wt% in an iron excess NiZnCo spinel matrix, affecting noticeably the magnetic properties at low and high values of the applied field. The initial permeability is reduced by about 50% with the addition of only 0.1 % SiO₂, while the coercivity almost triples, without noticeable changes in porosity or grain distribution. The vacancy and Fe²⁺ content of the sintered material also show a considerable change. The energy associated to the transformation Fe³⁺ Fe²⁺ for the samples without SiO₂ was found to be 0.41–0.42 eV, while for the samples with SiO₂ additions it decreased to 0.26 eV. The changes in magnetic properties are thought to be caused, more than because of the mentioned changes in ion distribution, by the stresses and defects created in the lattice due to the very small size of the Si⁴⁺ ion, which substitutes Fe³⁺ ions in tetrahedral sites. The transition Fe³⁺ Fe²⁺ seems to take place exclusively in the octahedral sites.     

Laser nitriding of iron: Influence of the laser parameters on the nitriding efficiency

Laser nitriding of Armco iron in nitrogen was studied for KrF-excimer-laser irradiation. The influence of the energy density and number of pulses on the nitrogen take-up and the nitride phases formed was investigated using Resonant Nuclear Reaction Analysis (RNRA) and Mössbauer spectroscopy. Besides the original a-iron, austenite-Fe(N), martensite-Fe(N),-Fe₂₊N, and-Fe₁₆N₂ were identified. The fraction of the e-phase was found to increase with the number of pulses and the energy density. A threshold energy density of 1.8(2) J/cm² for the laser nitriding process was found.     

Compensations in small divisor problems

A general direct method, alternative to KAM theory, apt to deal with small divisor problems in the real-analytic category, is presented and tested on several small divisor problems including the construction of maximal quasi-periodic solutions for nearly-integrable non-degenerate Hamiltonian or Lagrangian systems and the construction of lower dimensional resonant tori for nearly-integrable Hamiltonian systems. The method is based on an explicit graph theoretical representation of the formal power series solutions, which allows to prove compensations among the monomials forming such representation.L.C. thanks C. Simó and theCentre de Recerca Matemàtica (Bellaterra) for kind hospitality; he also acknowledges partial support by CNR-GNAFA. The authors gratefully acknowledge helpful discussions with C. Liverani.     

Topologically nontrivial field configurations in noncommutative geometry

In the framework of noncommutative geometry we describe spinor fields with nonvanishing winding number on a truncated (fuzzy) sphere. The corresponding field theory actions conserve all basic symmetries of the standard commutative version (space isometries and global chiral symmetry), but due to the noncommutativity of the space the fields are regularized and they contain only a finite number of modes.Part of the Project P8916-PHY of the Fonds zur Förderung der wissenschaftlichen Forschung in Österreich.     

Meyer's concept of quasicrystal and quasiregular sets

This paper relates two mathematical concepts of long-range order of a set of atoms , each of which is based on restrictions on the set of interatomic distances –. A set in ⁿ is aMeyer set if is a Delone set and there is a finite setF such that . Meyer proposed that such sets include the possible structures of quasicrystals. He obtained a structure theory for such sets, which reformulates results that he obtained in harmonic analysis around 1970, and which relates these sets to cut-and-project sets. In geometric crystallography V.I. Galiulin introduced the concept ofquasiregular set, which is a set such that both and – are Delone sets. This paper shows that these two concepts are identical.