Adsorption of gases in carbon nanotubes: are defect interstitial sites important?

Molecular simulations are used to shed light on an ongoing controversy over where gases adsorb on single walled carbon nanotube bundles. We have performed simulations using models of carbon nanotube bundles composed of tubes of all the same diameter (homogeneous) and tubes of different diameters (heterogeneous). Simulation data are compared with experimental data in an effort to identify the best model for describing experimental data. Adsorption isotherms, isosteric heats of adsorption, and specific surface areas have been computed for Ar, CH 4, and Xe on closed, open, and partially opened homogeneous and heterogeneous nanotube bundles. Experimental data from nanotubes prepared from two different methods, electric arc and HiPco, were examined. Experimental adsorption isotherms and isosteric heats for nanotubes prepared by the electric arc method are in best agreement with simulations for heterogeneous bundles of closed nanotubes. Models including adsorption in defect interstitial channels are required to achieve good agreement with experiments. Experimental isosteric heats and specific surface areas on HiPco nanotubes are best described by a model consisting of heterogeneous bundles with approximately 11% of the nanotubes opened.     

Control of porosity geometry in amino acid derived nanoporous materials

Substitution of the pillaring ligand in the homochiral open-framework [Ni(2)(L-asp)(2)(bipy)] by extended bipy-type ligands leads to a family of layer-structured, homochiral metal-organic frameworks. The 1D channel topology can be modified by the nature of the organic linker, with shape, cross-section and the chemical functionality tuneable. In addition, the volume of these channels can be increased by up to 36 % compared to the parent [Ni(2)(L-asp)(2)(bipy)]. The linker 1,4-dipyridylbenzene (3rbp) gives access to a new layered homochiral framework [Ni(2)(L-asp)(2)(3rbp)] with channels of a different shape. In specific cases, non-porous analogues with the linker also present as a guest can be activated to give porous materials after sublimation. Their CO(2) uptake shows an increase of up to 30 % with respect to the parent [Ni(2)(L-asp)(2)(bipy)] framework.     

N-heterocyclic superelectrophiles and evidence for single electron transfer chemistry

In reactions with benzene and related substrates, an oxazole-based superelectrophile is found to be significantly more reactive than a related monocationic species. Theoretical calculations estimate that the lowest unoccupied molecular orbital (LUMO) for the superelectrophile is about 4 eV lower in energy than the LUMOs of comparable monocations. When the oxazole-based superelectrophile is reacted with ferrocene, a dimeric product is formed in high yield. The dimerization occurs by a single electron transfer reaction between the dicationic superelectrophile and ferrocene, followed by coupling of the radical cations.     

Mechanistically inspired design of Fe(III)-TAML peroxide-activating catalysts

Recent broad-ranging mechanistic studies of FeIII-TAML peroxide activators enable a strategy for designing catalysts with improved (i) hydrolytic and (ii) operational stabilities, (iii) faster activation of H2O2 and other peroxides, and (iv) a pH of highest activity closer to 7. Combining all items of insight leads to [Fe{1-NO2C6H3-3,4-(NCOCMe2NCO)2CF2}(OH2)]- (1a) which exhibits the most desirable technical performance in its class.     

Convergent assembly of highly potent analogues of bryostatin 1 via pyran annulation: bryostatin look-alikes that mimic phorbol ester function

Highly potent bryostatin analogues which contain the complete bryostatin core structure have been synthesized using a pyran annulation approach as a key strategic element. The A ring pyran was assembled using a pyran annulation reaction between a C1-C8 hydroxy allylsilane and an aldehyde comprising C9-C13. This pyran was transformed to a new hydroxy allylsilane and then coupled with a preformed C ring aldehyde subunit in a second pyran annulation, with concomitant formation of the B ring. This tricyclic intermediate was elaborated to bryostatin analogues which displayed nanomolar to subnanomolar affinity for PKC, but displayed properties indistinguishable from a phorbol ester in a proliferation/attachment assay.     

Electrogenerated chemiluminescence of a spirobifluorene-linked bisanthracene: a possible simultaneous, two-electron transfer

We report the electrogenerated chemiluminescence (ECL) of 2,2'-bis(10-phenylanthracen-9-yl)-9,9'-spirobifluorene (spiro-FPA), a dichromophoric molecule composed of two phenylanthracenes linked by a spirobifluorene moiety (PA-X-PA). The results are compared to those for 9,10-diphenylanthracene (DPA), a related molecule with a single chromophore. Cyclic voltammetry (CV) of spiro-FPA shows two reversible, closely spaced, one-electron transfers on both reduction and oxidation, occurring at E(o)(1,red) = -2.02, E(o)(2,red) = -2.07 V vs SCE and E(o)(1,ox) = 1.14, E(o)(2,ox) = 1.20 V vs SCE. The potentials for each pair are close enough to appear as a single peak in CV, indicating that the spirobifluorene moiety interrupts conjugation between the redox centers. The potentials observed are similar to those of DPA, which shows E(o)(red) = -2.06 V vs SCE and E(o)(ox) = 1.15 V vs SCE. The absorbance spectrum of spiro-FPA shows lambda(max,abs) = 377 nm, with 377 = 25,700 M(-1) s(-1), while DPA exhibited lambda(max,abs) = 374 nm, with 374 = 13,800 M(-1) s(-1), demonstrating that spiro-FPA has twice the available chromophores as DPA. Photoluminescence (PL) data for spiro-FPA shows lambda(max,PL) = 434 nm, with Phi(PL) = 0.74, while DPA fluoresces at 420 nm with Phi(PL) = 0.91; thus, there is greater solvent or structural relaxation in the spiro-FPA excited state, which may account for the greater internal conversion. Unlike DPA, the ECL spectrum of spiro-FPA exhibits long-wavelength emission not observed in the PL. We attribute this emission to excimers formed during annihilation ECL. Steric hindrance prevents DPA from forming excimers, even in ECL, but spiro-FPA annihilation can occur between pairs of di-ions (PA(*-)-X-PA(*-) and PA(*+)-X-PA(*+)), which are electrostatically more strongly attracted to one another than the mono-ions. This greater electrostatic attraction may be sufficient to overcome the steric hindrance to excimer formation. Lowering the electrolyte concentration decreases the electrostatic shielding of the ions from one another; thus, the increase in longer wavelength ECL accompanying a decrease in electrolyte concentration supports the role of the di-ions in excimer formation. Additionally, simulations show, consistent with experiment, a more rapid decrease in excimer concentration than in excited monomer concentration as a function of time after each potential pulse. This is probably due to the greater number of scavenging reactions available for di-ions. The simulations are confirmed experimentally when lower potential pulsing frequencies yield lower relative excimer emission. Since an excited state created by one-electron transfer between two di-ions should be rapidly quenched via electron transfer by the other PA moiety, the existence of excimers suggests the possibility of simultaneous, two-electron transfer to generate the excimer.     

Determination of peptide backbone torsion angles using double-quantum dipolar recoupling solid-state NMR spectroscopy

Several approaches for utilizing dipolar recoupling solid-state NMR (ssNMR) techniques to determine local structure at high resolution in peptides and proteins have been developed. However, many of these techniques measure only one torsion angle or are accurate for only certain classes of secondary structure. Additionally, the efficiency with which these dipolar recoupling experiments suppress the deleterious effects of chemical shift anisotropy (CSA) at high magnetic field strengths varies. Dipolar recoupling with a windowless sequence (DRAWS) has proven to be an effective pulse sequence for exciting double-quantum (DQ) coherences between adjacent carbonyl carbons along the peptide backbone. By allowing this DQ coherence to evolve, it is possible to measure the relative orientations of the CSA tensors and subsequently use this information to determine the Ramachandran torsion angles phi and psi. Here, we explore the accuracies of the assumptions made in interpreting DQ-DRAWS data and demonstrate their fidelity in measuring torsion angles corresponding to a variety of secondary structures irrespective of hydrogen-bonding patterns. It is shown how a simple choice of isotopic labels and experimental conditions allows accurate measurement of backbone secondary structures without any prior knowledge. This approach is considerably more sensitive for determining structure in helices and has comparable accuracy for beta-sheet and extended conformations relative to other methods. We also illustrate the ability of DQ-DRAWS to distinguish between structures in heterogeneous samples.     

A mechanistic probe for asymmetric reactions: deuterium isotope effects at enantiotopic groups

The development of a mechanistic probe that is especially suitable for the study of asymmetric reactions is presented. Chemically innocuous enantiotopic methyl groups are utilized as probes for the distinct environments that develop at the transition state for the (-)-B-chlorodiisopinocampheylborane reduction of 4'-methylisobutyrophenone. 2H kinetic isotope effects (KIEs) are determined for both enantiotopic methyl groups using two types of competition reactions. One competition is that between the d3-methyl enantiomeric isotopomers. The other competition reaction is that between the d6-dimethyl and perprotiated isotopologues. The rate constant ratios can be converted into kinetic isotope effects upon each of the individual enantiotopic methyl groups by invoking the rule of the geometric mean. The resulting isotope effect measurements yield highly precise values and contribute further understanding to the transition structure for this stereoselective reduction. The results are discussed in the context of steric isotope effects and the origins of these effects, which arise from the impact of steric crowding upon the anharmonicity of C-H bonds in the transition structure relative to the reactant state.     

Effects of shear rate on propagation of blood clotting determined using microfluidics and numerical simulations

This paper describes microfluidic experiments with human blood plasma and numerical simulations to determine the role of fluid flow in the regulation of propagation of blood clotting. We demonstrate that propagation of clotting can be regulated by different mechanisms depending on the volume-to-surface ratio of a channel. In small channels, propagation of clotting can be prevented by surface-bound inhibitors of clotting present on vessel walls. In large channels, where surface-bound inhibitors are ineffective, propagation of clotting can be prevented by a shear rate above a threshold value, in agreement with predictions of a simple reaction-diffusion mechanism. We also demonstrate that propagation of clotting in a channel with a large volume-to-surface ratio and a shear rate below a threshold shear rate can be slowed by decreasing the production of thrombin, an activator of clotting. These in vitro results make two predictions, which should be experimentally tested in vivo. First, propagation of clotting from superficial veins to deep veins may be regulated by shear rate, which might explain the correlation between superficial thrombosis and the development of deep vein thrombosis (DVT). Second, nontoxic thrombin inhibitors with high binding affinities could be locally administered to prevent recurrent thrombosis after a clot has been removed. In addition, these results demonstrate the utility of simplified mechanisms and microfluidics for generating and testing predictions about the dynamics of complex biochemical networks.     

Ultrafast carbene-carbene isomerization

The photochemistry of two isomeric aryl diazo ketones was investigated by fs time-resolved UV-vis and IR spectroscopies. Both diazo ketone excited states decompose in less than 300 fs by multiple pathways. One pathway involves concerted Wolff rearrangement and nitrogen extrusion, most likely in the syn rotomer. In the anti rotomer of one isomer, oxygen migration proceeds in concert with nitrogen extrusion to form rearranged keto carbene. This rotomer excited state also decomposes to form unrearranged carbene, which isomerizes in 5 ps.