Using conjoined rigid body/torsion angle simulated annealing to determine the relative orientation of covalently linked protein domains from dipolar couplings

A simple and robust method for determining the relative orientations of covalently linked protein domains using conjoined rigid body/torsion angle dynamics simulated annealing on the basis of residual dipolar couplings is presented. In this approach each domain is treated as a rigid body and the relevant degrees of conformational freedom are restricted to the backbone torsion angles (phi, psi) of the linker between the domains. By this means translational information afforded by the presence of an intact linker is preserved. We illustrate this approach using the domain-swapped dimer of the HIV-inactivating protein cyanovirin-N as an example.     

Ferromagnetic coupling through spin polarization in the hexanuclear [MnII(3)CuII(3)] complex

A novel Cu(II)-Mn(II) hexanuclear complex of formula [[MnCuL](3)(tma)](ClO(4))(3).8H(2)O [H(2)L = macrocyclic Robson proligand; H(3)tma = trimesic acid] has been obtained by connecting three heterobinuclear [Cu(II)Mn(II)L](2+) cationic species through the trimesate anion. The complex exhibits a C(3) rotational symmetry, imposed by the geometry of the bridging ligand. The interaction within each Mn(II)-Cu(II) pair is antiferromagnetic (J = -16.7 cm(-1)). A weak ferromagnetic coupling among the three S = 2 resulting spins through the tricarboxylato bridge leads to a S = 6 ground spin state, for which the spin polarization mechanism is responsible.     

A 2D coordination polymer with canted ferromagnetism constructed from ferromagnetic [Ni(II)Co(II)] nodes

A bimetallic coordination polymer, infinity (2)[{LNi (II)Co (II)}(dca) 2], has been constructed from heterobinuclear [Ni (II)Co (II)] nodes and dicyanamido spacers [L (2-) is the dianion of the Schiff base resulting from the 2:1 condensation of 3-methoxysalicyladehyde with 1,3-propanediamine; L (2-) = N, N'-propylenebis(3-methoxysalycilideneiminato)]. The intranode Co (II)-Ni (II) interaction was found to be ferromagnetic because of the orthogonality of the magnetic orbitals. Below 12 K, the onset of the canted ferromagnetic ordering is observed.     

Polylactide (PLA)-CaSO4 composites toughened with low molecular weight and polymeric ester-like plasticizers and related performances

Large amounts of stable β-anhydrite II (AII), a specific type of dehydrated gypsum and a by-product of lactic acid production process, can be melt-blended with bio-sourced and biodegradable polylactide (PLA) to produce economically interesting novel composites with high tensile strength and thermal stability.To enhance their toughness, while preserving an optimal stiffness, selected low molecular weight plasticizers (bis(2-ethylhexyl) adipate and glyceryl triacetate) and polymeric adipates with different molecular weights have been mixed with a specific PLA (l/d isomer ratio of 96/4) and 40 wt% of AII using an internal kneader. Addition of up to 10 wt% plasticizer into these highly filled compositions can trigger a fourfold increase of the impact strength with respect to the compositions without any modifier, cold crystallization properties and a significant decrease of their glass transition temperature. Moreover, these ternary compositions (PLA-AII-plasticizer) are clearly characterized by easier processing, notable thermo-mechanical performances and good filler dispersion. This study represents a new approach in formulating novel melt-processable polyester grades with improved characteristic features using PLA as biodegradable polymer matrix.     

Effect of polarization on the opsin shift in rhodopsins. 1. A combined QM/QM/MM model for bacteriorhodopsin and pharaonis sensory rhodopsin II

The optical and IR-spectroscopic properties of the protonated Schiff base of retinal are highly sensitive to the electrostatic environment. This feature makes retinal a useful probe to study structural differences and changes in rhodopsins. It also raises an interest to theoretically predict the spectroscopic response to mutation and structural evolution. Computational models appropriate for this purpose usually combine sophisticated quantum mechanical (QM) methods with molecular mechanics (MM) force fields. In an effort to test and improve the accuracy of these QM/MM models, we consider in this article the effects of polarization and inter-residual charge transfer within the binding pocket of bacteriorhodopsin (bR) and pharaonis sensory rhodopsin II (psRII, also called pharaonis phoborhodopsin, ppR) on the excitation energy using an ab initio QM/QM/MM approach. The results will serve as reference for assessing empirical polarization models in a consecutive article.