Synthesis and characterization of cobalt(II) and copper(II) complexes with 5-amino-3,4-dimethylisoxazole

Summary Complexes of cobalt(II) and copper(II) with 5-amino-3,4-dimethylisoxazole (5-ADI) have been prepared and studied by means of magnetic susceptibility measurements, near and far i.r. spectra, electronic spectroscopy and, when possible, conductivity measurements. The 5-ADI generally behaves as bridging (N_ring-, O- or N_ring-, -NH₂) ligand. All the complexes have an octahedral sterochemistry, except Co(5-ADI)₂X₂ (X = Cl, Br), Co₂(5-ADI)₇I₄ which are tetrahedral and Cu(5-ADI)₂ (ClO₄)₂ · 4 H₂O which is square planar.     

High-throughput mutational screening for beta-thalassemia by single-nucleotide extension

In this work a high-throughput method based on the single-nucleotide extension (SNE) reaction and multicolour detection in a DNA sequencer was developed to screen for eight mutations in the human beta-globin gene: IVSI.110, cd39, IVSI.1, IVSI.6, IVSII.745, HbC, HbS and cd6. The method has been validated on a large number of samples for the two most common mutations causing beta-thalassemia in the Mediterranean area (IVSI.110 and cd39). The development of a high-throughput, fast and reliable method to assay beta-thalassemia mutations represents a significant improvement in molecular diagnosis of this disease. The multicolour detection and the use of multiple injections further enhances the throughput of mutational screening by the DNA sequencer and facilitates automated genotyping for routine molecular diagnostics.     

The genomisotopic approach: a systematic method to isolate products of orphan biosynthetic gene clusters

With the increasing number of genomes sequenced and available in the public domain, a large number of orphan gene clusters, for which the encoded natural product is unknown, have been identified. These orphan gene clusters represent a tremendous source of novel and possibly bioactive compounds. Here, we describe a "genomisotopic approach," which employs a combination of genomic sequence analysis and isotope-guided fractionation to identify unknown compounds synthesized from orphan gene clusters containing nonribosomal peptide synthetases. Analysis of the Pseudomonas fluorescens Pf-5 genome led to the identification of an orphan gene cluster predicted to code for the biosynthesis of a lipopeptide natural product. Application of the genomisotopic approach to isolate the product of this gene cluster resulted in the discovery of orfamide A, founder of a group of bioactive cyclic lipopeptides.     

The complete form for the Joseph extended criterion

The global stability of some mechanical equilibrium of a horizontal layer of a binary mixture heated and salted from below in the presence of the thermal diffusion and thermal diffusive conductivity is studied. The complexity of the problem induced by the large number of the physical parameters was avoided by means of two choices of the involved constants (others than in the Joseph approach). By using the Joseph's parametric differentiation method, the explicit formula for the nonlinear stability bound is easily derived in terms of all involved physical parameters.

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Sunto Si Studia la stabilità globale dell'equilibrio meccanico per una miscela binaria in uno strato orizzontale riscaldato e a maggior concentrazione dal basso, in presenza di conducibilità termodiffusiva. Il problema della determinazione esplicita del limite di stabilità non lineare, abbastanza complesso a causa dell'elevato numero di parametri fisici, è risolto grazie ad una scelta opportuna di alcune incognite dipendenti dalle costanti introdotte nella definizione di energia. Usando il metodo della differenziazione parametrica di Joseph si determina un criterio di stabilità non lineare in termini di tutti i parametri fisici presenti.

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Work performed under the auspices of the Italian G.N.F.M.-C.N.R., supported by the Italian M.U.R.S.T. (40% and 60% funds) and by Romanian Academy under the Grant 90/1994.     

Cobalt(II) and nickel(II) chloride complexes with some 2-(4′-Methyl-2′-pyridyl and 2′- or 8′-quinolyl)benz-X-azoles

Summary Complexes of general formula ML_mCl₂ · nH₂O, where M=cobalt(II) or nickel(II); L=2-(4-methyl, 2-pyridyl)-benzimidazole (mpbi), 2-(4-methyl, 2-pyridyl)benzothiazole (mpbt), 2-(4-methyl, 2-pyridyl)benzoxazole (mpbo), 2-(4-methyl, 2-quinolyl)benzoxazole (mqbo), or 2-(4-methyl, 8-quinolyl)benzoxazole (mqbo); m=1,2; n=0–3, were prepared and characterized by t.g.a., conductance and magnetic measurements, i.r. and diffuse-reflectance electronic spectra.All the ligands behave as bidentate and coordinate through the pyridine- and isoxazole-nitrogen atoms.The nickel complexes have distorted octahedral or fivecoordinate structures. The cobalt complexes arepseudo-tet- rahedral except Co(mpbo)₂Cl₂·2H₂O where the metal is six-coordinate.     

PHOTOOXIDATION OF LANTHANIDE ION-LYSOZYME COMPLEXES. A NEW APPROACH TO THE EVALUATION OF INTRAMOLECULAR DISTANCES IN PROTEINS

Abstract— Rare-earth metal ions give 1:1 complexes with hen's egg-white lysozyme. Spectroscopic and enzymic activity measurements suggest that the binding site consists of the side chains of glutamic-35 and aspartic-52. The spatial conformation of these complexes is practically identical to that of native lysozyme, especially as concerns the environment of the tryptophyl side chains. Irradiation of La³⁺-lysozyme by visible light, in the presence of proflavine as photosensitizer, causes the oxidative modification of all the tryptophyl and methionyl residues at almost the same rate as in uncomplexed protein. On the other hand, when lanthanide ions with nonvanishing magnetic moments were coordinated with lysozyme, at least some tryptophans and methionines were protected from photooxidative attack. The distance of the protected residues from the coordination site increased with increasing magnetic moment of the bound metal ion, which suggests that inhibition of the photoprocess was mainly due to perturbation of the lifetime of the electronically excited intermediate species. On the basis of the atomic coordinates of lysozyme in the crystal state, it is thus possible to define a "quenching radius" for the various lanthanide ions; these radii could in turn be used to evaluate intramolecular distances in proteins of unknown tertiary structure, by identifying the amino acid residues that are protected or photooxidized upon irradiation of complexes between the given protein and several different lanthanide ions. Our studieson lysozyme allow us to define five radii of protection, ranging from 6·7 Å for Sm³⁺ to over 17 Å for Dy³⁺, Ho³⁺, Er³⁺ and Tb³⁺. Therefore, this technique opens the possibility of mapping appreciably large regions of a protein molecule.     

Kinetics and equilibria of the interactions of hydroxamic acids with gallium(III) and indium(III)

The thermodynamics and kinetics of the binding of Ga(III) and In(III) to two hydroxamic acids, C6H5-C(O)N(OH)H (BHA) and C6H5-C(O)N(OH)C6H5 (PBHA), have been investigated in acidic media. Spectrophotometric titrations in the UV region reveal that, with excess metal, only the chelate ML forms, whereas the concentration of the protonated species, MHL, is negligible. The thermodynamic parameters indicate that the driving force for formation of ML from MOH2+ and HL is mainly enthalpic, with entropic contributions favoring InL2+ and disfavoring GaL2+ formation. The kinetic (stopped-flow) experiments are interpreted on the basis of two parallel reaction paths both involving reaction of the undissociated ligand (HL): (a) M + HL <==> MHL <==> ML + H where MHL is in a steady state and (b) MOH + HL <==> ML + H2O. Whereas gallium binding to BHA and PBHA proceeds mainly through path b, indium binding to PBHA proceeds through both a and b paths. The rates of both the a and b steps are ligand dependent. Two alternative mechanisms are proposed. The first is based on the electronic characteristics of the ligands and is of the Ia type. The second, of the Id type, assumes that a considerable fraction of the ligand is unreactive owing to intramolecular hydrogen bonding (possibly including a water molecule) which blocks the reaction site. The reasons for preferring the former mechanism are discussed.     

Selective generation and reactivity of 5'-adenosinyl and 2'-adenosinyl radicals

The reaction of hydrated electrons (e(-)(aq) with 8-bromoadenosine 7 has been investigated by radiolytic methods coupled with product studies. Pulse radiolysis revealed that one-electron reductive cleavage of the C-Br bond gives the C8 radical 8 followed by a fast radical translocation to the sugar moiety. The reaction is partitioned between C5' and C2' positions in a 60:40 ratio leading to 5'-adenosinyl radical 9 and 2'-adenosinyl radical 11. This radical translocation from C8 to different sites of the sugar moiety has also been addressed computationally by means of DFT B3LYP calculations. In addition, ketone 21 was prepared and photolyzed providing an independent generation of C2' radical 11. Both C5' and C2' radicals undergo unimolecular reactions. Radical 9 attacks adenine with a rate constant of 1.0 x 10(4) s(-1) and gives the aromatic aminyl radical 10, whereas C2' radical 11 liberates adenine with a rate constant of 1.1 x 10(5) s(-1).