Ab initio studies of a water layer at transition metal surfaces

This paper presents a detailed study of a water adlayer adsorbed on Pt(111) and Rh(111) surfaces using periodic density functional theory methods. The interaction between the metal surface and the water molecules is assessed from molecular dynamics simulation data and single point electronic structure calculations of selected configurations. It is argued that the electron bands around the Fermi level of the metal substrate extend over the water adlayer. As a consequence in the presence of the water layer the surface as a whole still maintains its metallic conductivity-a result of a crucial importance for understanding the process of electron transfer through the water/metal interface and electrochemical reactions in particular. Our results also indicate that there exists a weak bond between the hydrogen of the water and the Rh metal atoms as opposed to the widespread (classical) models based on purely repulsive interaction. This suggests that the commonly used classical interactions potentials adopted for large scale molecular dynamics simulations of water/metal interfaces may need revision. Two adsorption models of water on transition metals with the OH bonds pointing towards or away of the surface are also examined. It is shown that due to the very close values of their adsorption energies one should consider the real structure of water on the surface as a mixture of these simple "up" and "down" models. A model for the structure of the adsorbed water layer on Rh(111) is proposed in terms of statistical averages from molecular dynamics simulations.     

Metabonomics: the use of electrospray mass spectrometry coupled to reversed-phase liquid chromatography shows potential for the screening of rat urine in drug development

The application of liquid chromatography/mass spectrometry (LC/MS) followed by principal components analysis (PCA) has been successfully applied to the screening of rat urine following the administration of three candidate pharmaceuticals. With this methodology it was possible to differentiate the control samples from the dosed samples and to identify the components of the mass spectrum responsible for the separation. These data clearly show that LC/MS is a viable alternative, or complementary, technique to proton NMR for metabonomics applications in drug discovery and development.     

Amidinoethylation—a new reaction—IV : The amidinoethylation of alcohols: a facile synthesis of 3-alkoxy-N,N'-substituted-propanamidines

The amidinoethylation of alcohols takes place by the addition of sodium alkoxides 2 (R¹ = Me, Et) to the CC double bond of a variety of N,N'-substituted-propenamidines 1 (Method A). This illustrates the activation of the CC double bond by the conjugated amidine function and provides a new class of Michael acceptors for alcohols. However, this activation is poorer than with other nucleophiles or Michael acceptors. The amidinoethylation makes available 3-alkoxy-N,N'-substituted-amidines not easily accessible by other classical methods. However, it is demonstrated that the general N,N'-substituted-amidine synthesis via the nitrilium salts can also apply to nitrile compounds having an alkoxygroup present on the molecule (method B). Since the cyanoethylation of alcohols (4) is a very fast and facile reaction the method B is the preferred strategy for the synthesis of 3-alkoxy-N,N'-substituted-propanamidines 3.     

Unraveling Water Structure Inside and Between Nanocapsules

Among Achim Müller's prolific crystal structure database, we have selected two crystalline phases in order to perform a whole and complete characterization of water structure at the nanometer scale. The first chosen example involves the Na₃(NH₄)₁₂[Mo₅₇Fe₆(NO)₆O₁₇₄(OH)₃(H₂O)₂₄] 76H₂O compound synthesized and characterized in 1994. Some very interesting yet unnoticed water clusters may be evidenced in the voids generated by the stacking of the polyanionic units. Among them, we have been able to characterized a pure water crown (H₂O)₁₈, a loose association of three strongly solvated ammonium ions [H₃N–HOH₂]⁺ mediated by two water dimers and one water molecule, a perfectly planar alternating six-member ring [(NH₄)₃(H₂O)₃]³⁺, a puckered chair-shaped hexagonal ring [(NH₄)₂(H₂O)₄]³⁺ and two triangular pyramidal water tetramers (H₂O)₄. It was also shown that the crown and the chair ring was involved through further hydrogen bonding into the formation of a quite novel supramolecular layer modeling the structure of water in contact with a polyelectrolyte. The second example involves the (gua)₃₂[Mo₁₃₂O₃₇₂(H₂O)₇₂(SO₄)₁₀(H₂PO₂)₂₀(gua)₂₀]nH₂O compound synthesized and characterized in 2002. Here, we provide for the first time a complete structural analysis of all the various hydrogen bond patterns encountered in this system. Among them we may cite, an intramolecular web covering the internal cavity, an intramolecular finite system involving the guanidinium cations and the nine-member ring pores of the Mo₁₃₂ shell and a central pure water cluster of one hundred water molecules. In this last case, the evolution of the hydrogen bond strengths on a per H-bond basis or within supramolecular aggregates ([H₂O]₂₀, [H₂O]₄₀, and [H₂O]₁₀₀) is quantitatively studied from standpoints involving both geometry (H–OO bond angles distribution) and energy (partition functions). A survey of other crystalline phases involving water clusters is also presented. It is hoped that the study of these new clusters in a very next future will allow us to solve the well-known water puzzling behaviors.     

Rapidly self-deoxygenating controlled radical polymerization in water via in situ disproportionation of Cu(i)

Rapidly self-deoxygenating Cu-RDRP in aqueous media is investigated. The disproportionation of Cu(i)/Me₆Tren in water towards Cu(ii) and highly reactive Cu(0) leads to O₂-free reaction environments within the first seconds of the reaction, even when the reaction takes place in the open-air. By leveraging this significantly fast O₂-reducing activity of the disproportionation reaction, a range of well-defined water-soluble polymers with narrow dispersity are attained in a few minutes or less. This methodology provides the ability to prepare block copolymers via sequential monomer addition with little evidence for chain termination over the lifetime of the polymerization and allows for the synthesis of star-shaped polymers with the use of multi-functional initiators. The mechanism of self-deoxygenation is elucidated with the use of various characterization tools, and the species that participate in the rapid oxygen consumption is identified and discussed in detail.

The rapidly self-deoxygenating Cu-RDRP in aqueous media is investigated.     

Investigation of the metabolic fate of 2-, 3- and 4-bromobenzoic acids in bile-duct-cannulated rats by inductively coupled plasma mass spectrometry and high-performance liquid chromatography/inductively coupled plasma mass spectrometry/electrospray mass spectrometry

Inductively coupled plasma mass spectrometry (ICPMS) has been used to determine the rate and routes of excretion of bromine following the intraperitoneal administration (50 mg kg(-1)) of 2-, 3- and 4-bromobenzoic acids to male bile-duct-cannulated rats. Analysis of urine and bile for (79/81)Br using ICPMS showed that all three bromobenzoic acids were rapidly excreted (82-98%) within 48 h of dosing, primarily via the urine. High-performance liquid chromatography/inductively coupled plasma mass spectrometry (HPLC/ICPMS) was then used to obtain metabolite profiles for bile and urine. These profiles revealed that extensive metabolism had taken place, with the unchanged bromobenzoic acids forming a minor part of the total of compound-related material detected. Concomitant MS studies, supplemented by alkaline hydrolysis, enabled the identification of the major metabolite of all three of the bromobenzoic acids as a glycine conjugate. Ester glucuronide conjugates were also identified, but formed only a small proportion of total.     

Preparation and lithium doping of gallium oxynitride by ammonia nitridation via a citrate precursor route

Gallium oxynitride, isostructural to hexagonal gallium nitride (h-GaN), was obtained by ammonia nitridation of a precursor prepared from the addition of citric acid to an aqueous solution of gallium nitrate. Gallium oxynitride produced at 750 °C had a small amount of gallium vacancies, and was formulated as (Ga_0.89□_0.11) (N_0.66O_0.34) where the symbol □ stands for gallium vacancy. Both the gallium vacancies and oxygen substituted for nitrogen were randomly distributed within the structure. The amount of vacancies decreased with nitridation temperatures in the range of 750-850 °C. Approximately, 10 at% Li⁺ was doped into the gallium oxynitride, using a similar preparation with the additional presence of lithium nitrate, resulted in the random substitution of Ga³⁺ in an atomic ratio of Li/Ga<1 at 750 °C. Oxygen was codoped with lithium and substituted nitrogen in the wurtzite-type crystal lattice. These substitutions reduced the electrical conductivity in the gallium oxynitride semiconductor. A new oxynitride, Li₂Ga₃NO₄, was also obtained with Li₂CN₂ impurity using similar preparations from a mixture of Li/Ga?1. The crystal structure was isostructural with h-GaN, and was refined as P6₃mc with a=0.31674(1) nm, and c=0.50854(2) nm. The Ga and Li occupancies at the 2b site were refined to be 0.6085 and 0.3915, respectively, assuming that the other 2b site was randomly occupied with 1/5O and 4/5N. When the new compound was washed for over 1 min for the removal of Li₂CN₂ impurities, it was decomposed to a mixture of α-GaOOH and α-LiGaO₂. The as-prepared product with Li/Ga=1 showed the highest intensity in yellow luminescence among the products under excitation at 254 nm.     

Synthesis and properties of fluorous arenes and triaryl phosphorus compounds with branched fluoroalkyl moieties (“split pony tails”)

Most compounds designed for immobilization in fluorous media feature linear pony tails of the formula (CH₂)_m(CF₂)_n−1CF₃ [(CH₂)_mR_fn]. This paper presents a first-generation approach to compounds with branched or “split” pony tails of the formula (CH₂)_lCH[(CH₂)_mR_fn]₂. Allyl tri(n-butyl)tin is reacted twice with perfluorooctyl iodide (R_f8I; first, photochemical, 78-81%; second, thermal with radical initiator, 71%; 13-18 g scales) to give the secondary alkyl iodide ICH(CH₂R_f8)₂ (3). A subsequent Ni(Cl)₂(PPh₃)₂-catalyzed reaction with allyl tri(n-butyl)tin yields the branched alkene H₂CCHCH₂CH(CH₂R_f8)₂ (74%). A palladium-catalyzed Heck coupling with OP(p-C₆H₄Br)₃ gives the fluorous phosphine oxide OP(p-C₆H₄CHCHCH₂CH(CH₂R_f8)₂)₃ (84%), and Pd/C-catalyzed hydrogenation affords OP(p-C₆H₄(CH₂)₃CH(CH₂R_f8)₂)₃ (>99%). Reduction with SiHCl₃ gives P(p-C₆H₄(CH₂)₃CH(CH₂R_f8)₂)₃, which is protected as the air-stable borane adduct H₃B·P(p-C₆H₄(CH₂)₃CH(CH₂R_f8)₂)₃ (9, 64%). The CF₃C₆F₁₁/toluene partition coefficient of 9 is much higher than that of the analog with p-(CH₂)₃R_f8 groups (96.6:3.4 versus 37.3:62.7). The iodide 3 is unreactive towards PAr₃ at 175-250 °C. However, a CuBr-catalyzed reaction with C₆H₅MgBr gives C₆H₅CH(CH₂R_f8)₂, which also exhibits a high partition coefficient (97.9:2.1).     

Large-scale resonance amplification of optical sensing of volatile compounds with chemoresponsive visible-region diffraction gratings

Micropatterning of the vapochromic charge-transfer salt, [Pt(CNC6H4C10H21)4][Pd(CN)4], on transparent platforms yields transmissive chemoresponsive diffraction gratings. Exposure of the gratings to volatile organic compounds (VOCs) such as chloroform and methanol leads to VOC uptake by the porous material comprising the grating lattice or framework, and a change in the material's complex refractive index, ?. The index change is accompanied by a change in the degree of index contrast between the lattice and the surrounding medium (in this case, air), and a change in the diffraction efficiency of the grating. When a monochromatic light source that is not absorbed by the lattice material is employed as a probe beam, only changes in the real component of ? are sensed. Under these conditions, the grating behaves as a nonselective, but moderately sensitive, sensor for those VOCs capable of permeating the porous lattice material. When a probe color is shifted to a wavelength coincident with the vapochromic charge-transfer transition of the lattice material, the sensor response is selectively amplified by up to 3.5 orders of magnitude, resulting in greatly enhanced sensitivity and some degree of chemical specificity. On the basis of studies at four probe wavelengths, the amplification effect is dominated by resonant changes in the imaginary component of the refractive index. The observed wavelength- and analyte-dependent amplification effects are quantitatively well described by a model that combines a Kramers-Kronig analysis with an effective-medium treatment of dielectric effects.