Comparative computational and experimental study on the thermochemistry of the chloropyrimidines

The standard (p0 = 0.1 MPa) molar enthalpies of formation, Delta fH(0)(M), for liquid 2,4,6-trichloropyrimidine and for crystalline 2-chloropyrimidine, 2,4- and 4,6-dichloropyrimidine, and 2,4,5,6-tetrachloropyrimidine compounds were determined at T = 298.15 K by rotating-bomb combustion calorimetry. The standard molar enthalpies of vaporization or sublimation, Delta (g)(cr,l) H(0)(M), of these compounds at T = 298.15 K were determined by Calvet microcalorimetry. The experimental standard molar enthalpies of formation of those compounds, in the gaseous state, at T = 298.15 K, were thus obtained by combining these two sets of results. The latter values have been employed in the calibration of the computational procedure, which has been used to estimate the gas-phase enthalpies of formation for the other chloropyrimidines that were not possible to obtain in a pure form for the experimental study. It is found that the exchange-correlation functional based on the local spin density approximation (LSDA) seems to be a cheap choice for the estimation of enthalpies of formation for heterocycles containing nitrogen atoms; the well-known B3LYP hybrid method yields larger differences, with respect to the experimental values, for 2,4,6-tri- and 2,4,5,6-tetrachloropyrimidines.     

Interaction of self-assembled monolayers of DNA with electrons: HREELS and XPS studies

We present results from high-resolution electron energy loss spectroscopy (HREELS) and XPS studies of self-assembled monolayers of DNA. The monolayers are well-organized and display sharp vibrational peaks in the HREEL spectra. The electrons interact mainly with the backbone of the DNA. The XPS results indicate that, in most of the samples studied, the phosphates on the DNA are not charged.     

19-epi-okadaic acid, a novel protein phosphatase inhibitor with enhanced selectivity

A new protein phosphatase inhibitor, 19-epi-okadaic acid, was isolated from the marine dinoflagellate Prorocentrum belizeanum. Its structure and conformation in solution has been determined, and important differences were found when compared with the lead compound okadaic acid. The new metabolite showed nanomolar activities, and its selectivity for PP2A versus PP1 surpasses that shown by okadaic acid 10-fold, making it one of the most selective inhibitors of this class.     

The valence problem of Pd4Br4Te3

Pd(4)Br(4)Te(3) was prepared from Pd, Te, and PdBr(2) at 700 K. Its structure was determined by single-crystal X-ray diffraction to be triclinic, P$\bar 1$, Pearson symbol aP22; a=842.5(2), b=845.0(3), c=864.8(3) pm; alpha=82.55(3), beta=73.36(2), gamma=88.80(2) degrees ; Z=2. The Br and Te atoms are arranged according to the motif of cubic closest-packed spheres in which every 15th position is vacant; the Pd atoms occupy 8/15 of the octahedral voids. The symmetry relations with the packing of spheres are derived. Prominent structural units are hollow cuboctahedral [(PdBrTe)(6)] units, the Pd atoms are positioned near the centers of the square faces of the Br(6)Te(6) cuboctahedra; the cuboctahedra and double-octahedral Pd(2)Br(4)Te(6) units are connected to strands by sharing triangular Te(3) faces. The strands are condensed by common Br atoms into layered assemblies. Conspicuously close Te--Te contacts in the Te(3) triangles indicate attractive Te--Te interactions. The valence puzzle is resolved by the formula Pd(+II)(4)Br(-I)(4)Te(-4/3)(3). Positive Te--Te Mulliken orbital populations and the Pd--K, Br--K, and Te--L(III) XANES spectra of Pd(4)Br(4)Te(3) referenced to the spectra of PdBr(2), K(2)PdBr(6), PdTe, and PdTe(2) are in accord with attractive Te--Te interactions. The measured semiconducting and diamagnetic properties are compatible with the derived picture of chemical bonding in Pd(4)Br(4)Te(3).     

Nanocavity electrode array for recording from electrogenic cells

We present a new nanocavity device for highly localized on-chip recordings of action potentials from individual cells in a network. Microelectrode recordings have become the method of choice for recording extracellular action potentials from high density cultures or slices. Nevertheless, interfacing individual cells of a network with high resolution still remains challenging due to an insufficient coupling of the signal to small electrodes, exhibiting diameters below 10 μm. We show that this problem can be overcome by a new type of sensor that features an electrode, which is accessed via a small aperture and a nanosized cavity. Thus, the properties of large electrodes are combined with a high local resolution and a good seal resistance at the interface. Fabrication of the device can be performed with state-of-the-art clean room technology and sacrificial layer etching allowing integration of the devices into sensor arrays. We demonstrate the capability of such an array by recording the propagation of action potentials in a network of cardiomyocyte-like cells.     

Dinuclear cyano-bridged CoIII-FeII complexes as precursors for molecular mixed-valence complexes of higher nuclearity

The preparation and characterization of a series of trinuclear mixed-valence cyano-bridged Co(III)-Fe(II)-Co(III) compounds derived from known dinuclear [[L(n)Co(III)(mu-NC)]Fe(II)(CN)(5)](-) complexes (L(n)() = N(5) or N(3)S(2) n-membered pendant amine macrocycle) are presented. All of the new trinuclear complexes were fully characterized spectroscopically (UV-vis, IR, and (13)C NMR). Complexes exhibiting a trans and cis arrangement of the Co-Fe-Co units around the [Fe(CN)(6)](4-) center are described (i.e., cis/trans-[{L(n)Co(III)(mu-NC)](2)Fe(II)(CN)(4)](2+)), and some of their structures are determined by X-ray crystallography. Electrochemical experiments revealed an expected anodic shift of the Fe(III/II) redox potential upon addition of a tripositively charged [Co(III)L(n)] moiety. The Co(III/II) redox potentials do not change greatly from the di- to the trinuclear complex, but rather behave in a fully independent and noncooperative way. In this respect, the energies and extinction coefficients of the MMCT bands agree with the formal existence of two mixed-valence Fe(II)-CN-Co(III) units per molecule. Solvatochromic experiments also indicated that the MMCT band of these compounds behaves as expected for a class II mixed-valence complex. Nevertheless, its extinction coefficient is dramatically increased upon increasing the solvent donor number.     

Influence of the alkyl and alkoxy side chains on the electronic structure and charge-transport properties of polythiophene derivatives

Density Functional Theory has been used to study the structural, electronic and charge-transport properties of two regio-regular head-to-tail polythiophene derivatives, i.e. poly(3-hexyl-thiophene), P3HT, and poly(3-oxyhexyl-thiophene), P3OHT. The effect of substituents on the electronic structure was analyzed by means of bandwidth, bandgap, effective mass, total and partial densities of states and crystal orbital overlap populations. Electronic couplings were estimated from band diagrams as the splitting of the valence band. The neutral and cationic states of isolated oligomers were optimized using the supercell approximation. The hole-transfer rates and mobilities were evaluated according to Marcus's theory. Results provide a compelling illustration of the effect of side chains on the crystal packing, electronic structure and charge-transport properties. Thus, the hole mobility calculated for the alkyl derivative was 0.15 cm(2) V(-1) s(-1) (experimental mobility is 0.10 cm(2) V(-1) s(-1)), while the alkoxy derivative has a theoretical mobility of 0.49 cm(2) V(-1) s(-1). The obtained results hopefully could motivate experimentalists to try out P3OHT for an improved charge carrier mobility.     

Attacking boron nucleophiles: NMR properties of five-membered diazaborole rings

This paper reports computed NMR spectral data for the diazaborole anion (C2H4B1N2-) and the corresponding neutral five-membered rings with B-H (C2H5B1N2, diazaborole) and B-Li (C2H4B1Li1N2, Li-diazaborole) bonds, which are the central moieties of newly synthesized nucleophilic organoboryl five-membered rings, recently reported by Segawa et al. (Science 2006, 314, 113). Both spin-spin coupling constants and chemical shifts were obtained using high-level ab initio calculations. These data are a necessary complement to the very scarce experimental information available.     

2,4,6‐Trimethylphenyl isocyanide

The title compound, C₁₀H₁₁N, displays a crystallographic mirror plane that incorporates all the non‐H atoms, as well as the H atoms attached to the aromatic ring. The iso­cyano group is almost linear and shows an N[triple‐bond]C bond distance of 1.158 (3) Å.