Novel solution-phase immunoassays for molecular analysis of tumor markers

at 3 x 10(9) M(-1) and a step-wise binding process with PSA-free MAB. Thus, this solution-phase quantitative ECL immunoassay allowed measurement of the affinity of serum PSAs with their MABs and screening of PSAs based upon their affinity to MABs. Unlike other immunoassays, this immunoassay demonstrated one-step rapid analysis while simultaneously eliminating immobilization, separation and washing steps and detected PSA at a level of 1.7 pg mL(-1), which is 1000-fold more sensitive than current PSA immunoassays. Furthermore, single-molecule (SM) phosphorescence microscopy was developed to detect single serum PSA-free and PSA-complex molecules in solution with no use of antibody showing that PSA-free molecules diffused faster than PSA-complex molecules in solution. This finding is consistent with ECL measurements and implies the possibility of screening individual analytes in a complex mixture using their distinct SM diffusion distance. This is the first report describing the detection of single protein molecules labeled with a metal-complex using phosphorescence microscopy and also the screening of serum tumor markers using ECL and SM phosphorescence solution-phase assays.     

Analysis of bacterial adhesion using a gradient force analysis method and colloid probe atomic force microscopy

The atomic force microscope (AFM) has been used to examine the stickiness of bacteria on the basis of the analysis of approach and retraction force curves between the AFM tip and the bacterial surface. One difficulty in analyzing approach curve data is that the distance between the AFM tip and the surface of the bacterium is difficult to define. The exact distances are difficult to determine because the surface of the bacterium deforms during force imaging, producing a highly nonlinear region in the approach curve. In this study, AFM approach and retraction curves were obtained using a colloid probe AFM for three strains of Escherichia coli (D21, D21f2, and JM109). These strains differed in their relative adhesion to glass surfaces, on the basis of measurements of sticking coefficients in packed bed flow through column tests. A gradient force curve analysis method was developed to model the interactions between the colloid probe and a surface. Gradient analysis of the approach curve revealed four different regions of colloid-surface interactions during the approach and contact of the probe with the bacterial surface: a noninteraction region, a noncontact phase, a contact phase, and a constant compliance region. The noncontact phase, which ranged from 28 to 59 nm for the three bacterial strains, was hypothesized to arise primarily from steric repulsion of the colloid by extracellular polymers on the bacterial surface. The contact phase, spanning 59-113 nm, was believed to arise from the initial pressure of the colloid on the outer membrane of the cell. The constant compliance region likely reflected the response of the colloid probe to the stiff peptidoglycan layer that confers strength and rigidity to gram negative bacteria. It was shown that the sticking coefficients reported for the three E. coli strains were correlated with the length of the noncontact phase but not the properties of the other phases. Sticking coefficients were also not correlated with any parameters determined from retraction force curves such as pull-off distances or separation energies. These results show that gradient analysis is useful for studying the contribution of the length of the exopolymers on the cell surface to bacterial adhesion to glass surfaces.     

Metallic Free Carbon Nanotube Cluster Modified Screen Printed Electrodes for the Sensing of Nicotine in Artificial Saliva

We demonstrate that metallic free carbon nanotube cluster modified screen printed electrodes provide an advantageous sensing methodology for nicotine. The electrochemical oxidation of nicotine is possible at low potentials compared to other commercially available carbon electrodes. Using the carbon nanotube cluster modified screen printed electrodes a detection range of 10 to 1000 μM is possible with a limit of detection of 2 μM. The sensing protocol is shown to be viable in artificial saliva and is promising as a portable and rapid sensor for nicotine in oral fluid (saliva) in areas such as health/life insurance, instances where smoking is banned and also as a point of care test to help improve smoking quit rates.     

Interaction forces measured using AFM between colloids and surfaces coated with both dextran and protein

Both proteins and polysaccharides are biopolymers present on a bacterial surface that can simultaneously affect bacterial adhesion. To better understand how the combined presence of proteins and polysaccharides might influence bacterial attachment, adhesion forces were examined using atomic force microscopy (AFM) between colloids (COOH- or protein-coated) and polymer-coated surfaces (BSA, lysozyme, dextran, BSA+dextran and lysozyme+dextran) as a function of residence time and ionic strength. Protein and dextran were competitively covalently bonded onto glass surfaces, forming a coating that was 22-33% protein and 68-77% dextran. Topographic and phase images of polymer-coated surfaces obtained with tapping mode AFM indicated that proteins at short residence times (<1 s) were shielded by dextran. Adhesion forces measured between colloid and polymer-coated surfaces at short residence times increased in the order protein+dextran < or = protein < dextran. However, the adhesion forces for protein+dextran-coated surface substantially increased with longer residence times, producing the largest adhesion forces between polymer coated surfaces and the colloid over the longest residence times (50-100 s). It was speculated that with longer interaction times the proteins extended out from beneath the dextran and interacted with the colloid, leading to a molecular rearrangement that increased the overall adhesion force. These results show the importance of examining the effect of the combined adhesion force with two different types of biopolymers present and how the time of interaction affects the magnitude of the force obtained with two-polymer-coated surfaces.     

Construction of the Thermodynamic Jamming Limit for the Parking Process and Other Exclusion Schemes on {\mathbb Z}^{d}

We provide an explicit construction of the thermodynamic jamming limit for the parking process and other finite range exclusion schemes on . By means thereof, a strong law of large numbers for occupation densities is accomplished, and, amongst other results, the so called “super-exponential” (i.e. gamma) decay of pair correlation functions is established. Mathematics Subject Classification (1991): 60K99     

Design of small volume HX and triple-resonance probes for improved limits of detection in protein NMR experiments

Three- and four-frequency nuclear magnetic-resonance probes have been designed for the study of small amounts of protein. Both "HX" (1H, X, and 2H channels) and "triple-resonance" (1H, 15N, 13C, and 2H) probes were implemented using a single transmit/receive coil and multiple-frequency impedance matching circuits. The coil used was a six-turn solenoid with an observe volume of 15 microl. A variable pitch design was used to improve the B1 homogeneity of the coil. Two-dimensional HSQC spectra of approximately 1mM single labeled 15N- and double labeled 15N/13C-proteins were acquired in experimental times of approximately 2h. Triple-resonance capability of the small-volume triple-resonance probe was demonstrated by acquiring three-dimensional HNCO spectra from the same protein samples. In addition to enabling very small quantities of protein to be used, the extremely short pulse widths (1H = 4, 15N = 4, and 13C = 2 micros) of this particular design result in low power decoupling and wide-bandwidth coverage, an important factor for the ever-higher operating frequencies used for protein NMR studies.     

Magnetic Resonance Imaging of Gases: A Single-Point Ramped Imaging with T1 Enhancement (SPRITE) Study

A pure phase-encoding MRI technique, single-point ramped imaging withT₁enhancement, SPRITE, is introduced for the purpose of gas phase imaging. The technique utilizes broadband RF pulses and stepped phase encode gradients to produce images, substantially free of artifacts, which are sensitive to the gasT₁andT^*:₂relaxation times. Images may be acquired from gas phase species with transverse relaxation times substantially less than 1 ms. Methane gas images,¹H, were acquired in a phantom study. Sulfur hexafluoride,¹⁹F, images were acquired from a gas-filled porous coral sample. High porosity regions of the coral are observed in both the MRI image and an X-ray image. Sensitivity and resolution effects due to signal modulation during the time-efficient acquisition are discussed. A method to increase the image sensitivity is discussed, and the predicted improvement is shown through 1D images of the methane gas phantom.     

The radiation field of a hypersonic nozzle flow

This paper discusses features of the spectra observed looking axially towards the throat of a hypersonic nozzle in a chock tunnel assembly. At the throat, the gas is optically opaque, whilst at the nozzle exit the gas is optically thin. In principle, the radiation field may be controlled by varying the nozzle shape and it may therefore be used for optical modelling of other radiation fields, of differing physical dimensions. Requirements for implementing this programme are discussed.