Collisional activation of ions in RF ion traps and ion guides: The effective ion temperature treatment

Ion transfer and storage using inhomogeneous radio frequency (RF) electric fields in combination with gas-assisted ion cooling and focusing constitutes one of the basic techniques in mass spectrometry today. The RF motion of ions in the bath gas environment involves a large number of ion-neutral collisions that leads to the internal activation of ions and their effective "heating" (when a thermal distribution of internal energies results). The degree of ion activation required in various applications may range from a minimum level (e.g., slightly raising the average internal energy) to an intense level resulting in ion fragmentation. Several research groups proposed using the effective temperature as a measure of ion activation under conditions of multiple ion-neutral collisions. Here we present approximate relationships for the effective ion temperature relevant to typical operation modes of RF multipole devices. We show that RF ion activation results in near-thermal energies for ions occupying an equilibrium position at the center of an RF trap, whereas increased ion activation can be produced by shifting ions off-center, e.g., by means of an external DC electric field. The ion dissociation in the linear quadrupole ion trap using the dipolar DC ion activation has been observed experimentally and interpreted in terms of the effective ion temperature.     

Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometric analysis of the recombinant human macrophage colony stimulating factor β and derivatives

The potential of electrospray ionization (ESI) Fourier transform ion cyclotron mass spectrometry (FTICR-MS) to assist in the structural characterization of monomeric and dimeric derivatives of the macrophage colony stimulating factor beta (rhM-CSF beta) was assessed. Mass spectrometric analysis of the 49 kDa protein required the use of sustained off-resonance irradiation (SORI) in-trap cleanup to reduce adduction. High resolution mass spectra were acquired for a fully reduced and a fully S-cyanylated monomeric derivative (approximately 25 kDa). Mass accuracy for monomeric derivatives was better than 5 ppm, after applying a new calibration method (i.e., DeCAL) which eliminates space charge effects upon high accuracy mass measurements. This high mass accuracy allowed the direct determination of the exact number of incorporated cyanyl groups. Collisionally induced dissociation using SORI yielded b- and y-fragment ions within the N- and C-terminal regions for the monomeric derivatives, but obtaining information on other regions required proteolytic digestion, or potentially the use of alternative dissociation methods.     

Synchrotron FTIR microscopy of Langmuir-Blodgett monolayers and polyelectrolyte multilayers at the solid-solid interface

Synchrotron FTIR microscopy has been used to probe the structure of model boundary lubricant layers confined at the solid-solid interface. The combination of high brightness of the IR source and a novel contact geometry that uses a hemispherical internal reflection element as the means for light delivery has enabled the detection of <2.5 nm thin monolayer lubricant layers in the solid-solid contact, in addition to allowing for spectral acquisition from specific regions of the contact. Spectra of hydration water from within a confined polyelectrolyte multilayer film have also been acquired, highlighting the altered hydrogen bonding environment within the polymer layer.     

Angular Averaged Profiling of the Radial Electric Field in Compensated FTICR Cells

A recent publication from this laboratory reported a theoretical analysis comparing approaches for creating harmonic ICR cells. We considered two examples of static segmented cells--namely, a seven segment cell developed in this laboratory and one described by Rempel et al., along with a recently described dynamically harmonized cell by Boldin and Nikolaev. This conceptual design for a dynamically harmonized cell has now been reduced to practice and first experimental results obtained with this cell were recently reported in this journal; this publication reported details of cell construction and described its performance in a 7 tesla Fourier transform mass spectrometer. We describe the extension of theoretical analysis creating harmonic ICR cells to include angular-averaged radial electric field calculations and a discussion of the influence of trapping plates.     

Advanced Mass Calibration and Visualization for FT-ICR Mass Spectrometry Imaging

Mass spectrometry imaging by Fourier transform ion cyclotron resonance (FT-ICR) yields hundreds of unique peaks, many of which cannot be resolved by lower performance mass spectrometers. The high mass accuracy and high mass resolving power allow confident identification of small molecules and lipids directly from biological tissue sections. Here, calibration strategies for FT-ICR MS imaging were investigated. Sub-parts-per-million mass accuracy is demonstrated over an entire tissue section. Ion abundance fluctuations are corrected by addition of total and relative ion abundances for a root-mean-square error of 0.158?ppm on 16,764 peaks. A new approach for visualization of FT-ICR MS imaging data at high resolution is presented. The ??Mosaic Datacube?? provides a flexible means to visualize the entire mass range at a mass spectral bin width of 0.001?Da. The high resolution Mosaic Datacube resolves spectral features not visible at lower bin widths, while retaining the high mass accuracy from the calibration methods discussed.     

A New Eigenvalue Localization Theorem via Graph Theory

We give a generalization of a well-known result of Brualdi concerning eigenvalue localization and compare this generalization with related results in this area. (© 2005 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Theoretical and experimental X-ray photoelectron spectroscopy investigation of ion-implanted nafion

The membrane properties of a Nafion surface can be modified by ion implantation with N⁺ or F⁺. The results are presented of an X-ray photoelectron spectroscopy (XPS) study of implanted surfaces. For the interpretation of the XPS spectra, calculations using a semiempirical quantum chemical formalism (AM1) have been applied, in conjunction with a charge-potential model, to predict the C_1s core electron binding energies. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 551–556, 2004     

Graphs with maximum connectivity index

Let G be a graph and d_v the degree (=number of first neighbors) of its vertex v. The connectivity index of G is χ=∑ (d_ud_v)^−1/2, with the summation ranging over all pairs of adjacent vertices of G. In a previous paper (Comput. Chem. 23 (1999) 469), by applying a heuristic combinatorial optimization algorithm, the structure of chemical trees possessing extremal (maximum and minimum) values of χ was determined. It was demonstrated that the path P_n is the n-vertex tree with maximum χ-value. We now offer an alternative approach to finding (molecular) graphs with maximum χ, from which the extremality of P_n follows as a special case. By eliminating a flaw in the earlier proof, we demonstrate that there exist cases when χ does not provide a correct measure of branching: we find pairs of trees T, T′, such that T is more branched than T′, but χ(T)>χ(T′). The smallest such examples are trees with 36 vertices in which one vertex has degree 31.     

Gas-phase study of the chemistry and coordination of lead(II) in the presence of oxygen-, nitrogen-, sulfur-, and phosphorus-donating ligands

Using a pickup technique in association with high-energy electron impact ionization, complexes have been formed in the gas phase between Pb(2+) and a wide range of ligands. The coordinating atoms are oxygen, nitrogen, sulfur, and phosphorus, together with complexes consisting of benzene and argon in association with Pb(2+). Certain ligands are unable to stabilze the metal dication, the most obvious group being water and the lower alcohols, but CS(2) is also unable to form [Pb(CS(2))(N)](2+) complexes. Unlike many other metal dication complexes, those associated with lead appear to exhibit very little chemical reactivity following collisional activation. Such reactions are normally promoted via charge transfer and are initiated using the energy difference between M(2+) + e(-) --> M(+) and L --> L(+) + e(-), which is typically approximately 5 eV. In the case of Pb(2+), this energy difference usually leads to the appearance of L(+) and the loss of a significant fraction of the remaining ligands as neutral species. In many instances, Pb(+) appears as a charge-transfer product. The only group of ligands to consistently exhibit chemical reactivity are those containing sulfur, where a typical product might be PbS(+)(L)(M) or PbSCH(3)(+)(L)(M).