Hydroxyl radical probe of the calmodulin-melittin complex interface by electrospray ionization mass spectrometry

The calcium-dependent interaction of calmodulin and melittin is studied through the application of a radical probe approach in which solutions of the protein and peptide and protein alone are subjected to high fluxes of hydroxyl and other oxygen radicals on millisecond timescales. These radicals are generated by an electrical discharge within an electrospray ion source of a mass spectrometer. Condensation of the electrosprayed droplets followed by proteolytic digestion of both calmodulin and melittin has identified residues in both which participate in the interaction and/or are shielded from solvent within the protein complex. Consistent with other theoretical models and available experimental data, the tryptophan residue of melittin at position 19 is shown to be critical to the formation of the complex with the C-terminal domain of peptide enveloped by and protected from oxidation upon binding to the protein. Furthermore, the N-terminal domain (to residue 36) and tyrosine at position 99 in calmodulin are significantly protected from limited oxidation upon the binding of melittin while exposing the phenylalanine residue at position 92 of the flexible loop domain. The N-terminus (through residue 36) of calmodulin is shown to lie in closer proximity to the melittin helix than its C-terminal counterpart (residues 127-148) based upon the protection levels measured at reactive residues within these segments of the protein.     

Characterization of acridone dyes for use in four-decay detection in DNA sequencing

Four acridone dyes and dye-labeled primers were characterized for use in four-decay DNA sequencing. In the four-decay scheme, fluorescence lifetime replaces spectral ("color") selectivity for distinguishing between four base-specific labels in a single-lane capillary electrophoresis (CE) separation of the DNA fragments. Prior to the introduction of the acridone dyes, a major obstacle to four-decay detection was the lack of four suitable dyes with resolvable lifetimes. The four acridone dyes, whether free in solution or tethered to DNA primer, exhibit significant differences among their lifetimes and are well-suited to use together in four-decay sequencing. The lifetimes of the four dye-labeled DNA primers that were sequentially injected and detected on-the-fly in a 2% POP6 sequencing gel were 4, 6, 11 and 14 ns. A 405 nm violet laser diode provides optimal excitation of the four dyes.     

New polycyclic diamine scaffolds from dimerization of 3-alkyl-1,4-dihydropyridines in acidic medium

[reaction: see text] 3-Alkyl-1,4-dihydropyridines dimerize in acidic medium, at low temperature, to give polycyclic imminium salts derivatives that were reduced to afford new polycyclic diamine scaffolds. The reaction can be extended to enantiopure series starting from R-(+)- or S-(-)-1-phenylethylamine. Long exposure of the polycyclic imminium salt intermediates to air moisture at 20 degrees C resulted in formation of new amide derivatives. This is probably due to the addition of water followed by an intramolecular oxido-reduction process.     

Improved synthesis of functionalized 5,6-dihydro-pyrimido[4,5-b][1,4]oxazepines

Novel synthetic approaches toward 5,6-dihydro-pyrimido[4,5-b][1,4]oxazepines were reported that led to successful introduction of poorly reactive anilines and various 2-hydroxybenzaldehydes to this therapeutically relevant scaffold. More extensive SAR studies on this scaffold hence became possible.     

On radial weighting effects in gaussian expansions of self-consistent field atomic orbitals

Gaussian expansions of the SCF functions for the first row atoms, boron through fluorine, in ground and low-lying electronic states have been generated under a wide range of radial weighting conditions by a full least-squares procedure. Typical results are presented and the quality of the wavefunctions obtained are analyzed in terms of regional electron densities and a variety of expectation values including energies. A novel method for recursive evaluation of repeated integrals of the error function, F _l (,), is adopted and analyzed. These integrals are central quantities in the least-squares procedure employed.

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Zusammenfassung Entwicklungen nach Gaußfunktionen für SCF-Funktionen von Elementen der ersten Reihe (Bor bis Fluor) wurden für den Grundzustand und niedrige angeregte Zustände einer Methode der kleinsten Quadrate berechnet, wobei eine Reihe von radialen Gewichtsfaktoren benutzt wurden. Einige typische Ergebnisse werden mitgeteilt und die Qualität der erhaltenen Wellenfunktion wird mit Hilfe von regionalen Elektronendichten und einer Reihe von Erwartungswerten sowie der Energie geprüft. Eine neue Methode für die rekursive Auswertung der mehrfachen Integrale der Fehlerfunktion F _l (, ) wird angewendet und analysiert. Diese Integrale sind von zentraler Bedeutung in der benutzten Methode der kleinsten Quadrate.

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Résumé Engendrement de représentations gaussiennes des fonctions SCF pour les atomes de la première ligne, du bore au fluor, dans les états électroniques fondamentaux et faiblement excités, avec un large éventail de conditions de pondération radiale obtenues par une procédure de moindres carrés. Des résultats typiques sont présentés et les qualités des fonctions d'onde obtenues sont analysées en fonction des densités électroniques par régions et de différentes valeurs moyennes dont les énergies. Adoption et analyse d'une nouvelle méthode pour l'évaluation récursive d'intégrales répétées de la fonction d'erreur F _l (,). Ces intégrales sont des quantités centrales dans les procédures de moindres carrés utilisées.

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Research performed under the auspices of the U.S. Atomic Energy Commission.

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Summer student program participant, 1971, from Swarthmore College, Swarthmore, Pa.     

Molecular structures of two unexpected metal complexes obtained from additions of coordinated phosphines to acetylenes

The syntheses and structures of two new compounds are reported. The first compound, [Cr(CO)₄]₂[C₄F₂(PPh₂)₄], obtained from Cr(CO)₄(PPh₂H)₂ and CF₃CCF₃ in the presence of one equivalent of BuLi has a structure with the ligand 1,2,3,4-tetrakis(diphenylphosphino)-1,4-difluorobutadiene chelating to two Cr(CO)₄ groups via the 1,4 and 2,3 phosphine groups. A mechanism for the formation of this compound is suggested which involves sequential deprotonation of a phosphine, nucleophilic attack on the fluorocarbon, and fluoride ion elimination. The second compound, CrC₃₆H₂₈P₂O₇, arises from a similar base promoted reaction of Cr(CO)₄-(PPhH₂)₂ and PhCCCOOEt. Here the expected initial product from cyclization of these reactants acts as a nucleophile to attack a second equivalent of the acetylene. The intermediate carbanion from this reaction can undergo a ring closure by displacement of OEt^-, giving the observed product.     

Use of an automated image processing program to quantify recombinant adenovirus particles.

Electron microscopy has a pivotal role as an analytical tool in pharmaceutical research. However, digital image data have proven to be too large for efficient quantitative analysis. We describe here the development and application of an automated image processing (AIP) program that rapidly quantifies shape measurements of recombinant adenovirus (rAd) obtained from digitized field emission scanning electron microscope (FESEM) images. The program was written using the macro-recording features within Image-Pro Plus software. The macro program, which is linked to a Microsoft Excel spreadsheet, consists of a series of subroutines designed to automatically measure rAd vector objects from the FESEM images. The application and utility of this macro program has enabled us to rapidly and efficiently analyze very large data sets of rAd samples while minimizing operator time.     

Vibrational spectrum of I(H2O)

The infrared spectrum of the ionic cluster I⁻(H₂O) was recorded from 3170 to 3800 cm⁻¹ by vibrational predissociation spectroscopy. A strong multiplet observed at 3415 cm⁻¹ and a narrow band at 3710 cm⁻¹ were assigned as a hydrogen-bonded OH stretch and free OH stretch respectively, indicating that H₂O forms a single hydrogen bond with the iodide anion. Ab initio vibrational frequencies and intensities were computed at the second-order Møller-Plesset (MP2) level for the minimum energy configuration, a nearly linear hydrogen-bonded isomer, and for a low-lying saddlepoint, a symmetric C_2v bridged isomer. The spectrum predicted for the hydrogen-bonded isomer agreed well with experiment.     

Enantiomeric resolution of underivatized small peptides by HPLC with a chiral crown ether stationary phase

Factors influencing the stereoisomeric resolution of underivatized dipeptides and a representative tripeptide on Crownpak (CR) columns have been investigated. The elution order and relative retention suggest that a combination of chiral, steric, and hydrophobic interactions effects the extent of chiral recognition and the retention achieved during separations. Some dipeptides whose amine terminus is located three atoms from the asymmetric center (such as dipeptides of D ,L -glycine) were resolved, but the elution order was the opposite of that expected for the type of Crownpak column used (CR(+)). Peptides containing hydrophobic substituents were strongly retained, but their retention times could be significantly reduced, and detectability improved, by use of gradient elution. Analysis of a commercial sample of D ,L -leucine-D ,L -alanine revealed the stereoisomers to be present in an unexpected quantitative ratio and demonstrated the utility of these separations for quality assurance and quantitative analyses.