Relativistic Jahn-Teller effects in the photoelectron spectra of tetrahedral P4, As4, Sb4, and Bi4

The group-V tetrahedral cluster cations P(4)(+), As(4)(+), Sb(4)(+), and Bi(4)(+) are known to exhibit exceptionally strong Jahn-Teller (JT) effects of electrostatic origin in their (2)E ground states and (2)T(2) excited states. It has been predicted that there exist, in addition, JT couplings of relativistic origin (arising from the spin-orbit (SO) operator) in (2)E and (2)T(2) states of tetrahedral systems, which should become relevant for the heavier elements. In the present work, the JT and SO couplings in the group-V tetramer cations have been analyzed with ab initio relativistic electronic structure calculations. The vibronic line spectra and the band shapes of the photoelectron spectra were simulated with time-dependent quantum wave-packet methods. The results provide insight into the interplay of electrostatic and relativistic JT couplings and SO splittings in the complex photoelectron spectra of these systems.     

The C-H bond dissociation energy of furan: photoelectron spectroscopy of the furanide anion

Using photoelectron spectroscopy, we interrogate the cyclic furanide anion (C(4)H(3)O(-)) to determine the electron affinity and vibrational structure of the neutral furanyl radical and the term energy of its first excited electronic state. We present the 364-nm photoelectron spectrum of the furanide anion and measure the electron affinity of the X?(2)A(') ground state of the α-furanyl radical to be 1.853(4) eV. A Franck-Condon analysis of the well-resolved spectrum allows determination of the harmonic frequencies of three of the most active vibrational modes upon X?(2)A(') ← X?(1)A(') photodetachment: 855(25), 1064(25), and 1307(40) cm(-1). These modes are ring deformation vibrations, consistent with the intuitive picture of furanide anion photodetachment, where the excess electron is strongly localized on the α-carbon atom. In addition, the A?(2)A(') excited state of the α-furanyl radical is observed 0.68(7) eV higher in energy than the X?(2)A(') ground state. Through a thermochemical cycle involving the known gas-phase acidity of furan, the electron affinity of the furanyl radical yields the first experimental determination of the C-H(α) bond dissociation energy of furan (DH(298)(C(4)H(3)O-H(α))): 119.8(2) kcal mol(-1).     

HXeOBr in a xenon matrix

We report on a new noble-gas molecule HXeOBr prepared in a low-temperature xenon matrix from the HBr and N(2)O precursors by UV photolysis and thermal annealing. This molecule is assigned with the help of deuteration experiments and ab initio calculations including anharmonic methods. The H-Xe stretching frequency of HXeOBr is observed at 1634 cm(-1), which is larger by 56 cm(-1) than the frequency of HXeOH identified previously. The experiments show a higher thermal stability of HXeOBr molecules in a xenon matrix compared to HXeOH.     

Hydrogen exchange mass spectrometry of bacteriorhodopsin reveals light-induced changes in the structural dynamics of a biomolecular machine

Many proteins act as molecular machines that are fuelled by a nonthermal energy source. Examples include transmembrane pumps and stator-rotor complexes. These systems undergo cyclic motions (CMs) that are being driven along a well-defined conformational trajectory. Superimposed on these CMs are thermal fluctuations (TFs) that are coupled to stochastic motions of the solvent. Here we explore whether the TFs of a molecular machine are affected by the occurrence of CMs. Bacteriorhodopsin (BR) is a light-driven proton pump that serves as a model system in this study. The function of BR is based on a photocycle that involves trans/cis isomerization of a retinal chromophore, as well as motions of transmembrane helices. Hydrogen/deuterium exchange (HDX) mass spectrometry was used to monitor the TFs of BR, focusing on the monomeric form of the protein. Comparative HDX studies were conducted under illumination and in the dark. The HDX kinetics of BR are dramatically accelerated in the presence of light. The isotope exchange rates and the number of backbone amides involved in EX2 opening transitions increase roughly 2-fold upon illumination. In contrast, light/dark control experiments on retinal-free protein produced no discernible differences. It can be concluded that the extent of TFs in BR strongly depends on photon-driven CMs. The light-induced differences in HDX behavior are ascribed to protein destabilization. Specifically, the thermodynamic stability of the dark-adapted protein is estimated to be 5.5 kJ mol(-1) under the conditions of our work. This value represents the free energy difference between the folded state F and a significantly unfolded conformer U. Illumination reduces the stability of F by 2.2 kJ mol(-1). Mechanical agitation caused by isomerization of the chromophore is transferred to the surrounding protein scaffold, and subsequently, the energy dissipates into the solvent. Light-induced retinal motions therefore act analogously to an internal heat source that promotes the occurrence of TFs. Overall, our data highlight the potential of HDX methods for probing the structural dynamics of molecular machines under "engine on" and "engine off" conditions.     

Separation-based approach to study dissociation kinetics of noncovalent DNA-multiple protein complexes

Noncovalent binding of DNA with multiple proteins is pivotal to many regulatory cellular processes. Due to the lack of experimental approaches, the kinetics of assembly and disassembly of DNA-multiple proteins complexes have never been studied. Here, we report on a first method capable of measuring disassembly kinetics of such complexes. The method is based on continuous spatial separation of different complexes. The kinetics of multiple complex dissociation processes are also spatially separated, which in turn facilitates finding their rate constants. Our separation-based approach was compared with a conventional no-separation approach by using computer simulation of dissociation kinetics. It proved to be much more accurate than the no-separation approach and to be a powerful tool for testing hypothetical mechanisms of the disassembly of DNA-multiple proteins complexes. An experimental implementation of the separation-based approach was finally demonstrated by using capillary electrophoresis as a separation method. The interaction between an 80 nucleotide long single-stranded DNA and single-stranded DNA binding protein was studied. DNA-protein complexes with one and two proteins were observed, and rate constants of their dissociation were determined. We foresee that a separation approach will be also developed to study the kinetics of the formation of DNA-multiple protein complexes.     

A study of mass transfer kinetics of alanyl-alanine on a chiral crown ether stationary phase

The mass transfer kinetics of alanyl-alanine enantiomers in a column packed with a chiral stationary phase (CSP) ChiroSil RCA(+) was studied by means of the moment method. Methanol-water solutions acidified with sulphuric acid were used as the mobile phase. It was shown that the spreading of peaks in the column was strongly affected by abnormal eddy diffusion. This effect was well described within the framework of the Giddings coupling theory. The comprehensive four-term Giddings equation for eddy diffusion was applied, considering simultaneous contribution of the trans-column, trans-channel, short-range inter-channel, and long-range inter-channel dispersion factors. Through these calculations, a predominant importance of the trans-column flow velocity bias was revealed. Besides eddy diffusion, the adsorption kinetic resistance to mass transfer plays a noticeable role in band broadening, all the other contributions (from longitudinal molecular diffusion, external and intraparticle mass transfer) being of minor significance. A relative importance of the mass transfer kinetics increases correlatively with a growth of the retention factor. Both the retention and kinetics of the adsorption of alanyl-alanine on the CSP in study are enantioselective. The influence of the column pressure on retention as well as corrections required because of this influence are also discussed.     

Coherent control of the isomerization of retinal in bacteriorhodopsin in the high intensity regime

Coherent control protocols provide a direct experimental determination of the relative importance of quantum interference or phase relationships of coupled states along a selected pathway. These effects are most readily observed in the high intensity regime where the field amplitude is sufficient to overcome decoherence effects. The coherent response of retinal photoisomerization in bacteriorhodopsin to the phase of the photoexcitation pulses was examined at fluences of 10(15) - 2.5 ×?10(16) photons per square centimeter, comparable to or higher than the saturation excitation level of the S(0) - S(1) retinal electronic transition. At moderate excitation levels of ～6 ×?10(15) photons/cm(2) (<100 GW/cm(2)), chirping the excitation pulses increases the all-trans to 13-cis isomerization yield by up to 16% relative to transform limited pulses. The reported results extend previous weak-field studies [Prokhorenko et al., Science 313, 1257 (2006)] and further illustrate that quantum coherence effects persist along the reaction coordinate in strong fields even for systems as complex as biological molecules. However, for higher excitation levels of ～200 GW/cm(2), there is a dramatic change in photophysics that leads to multiphoton generated photoproducts unrelated to the target isomerization reaction channel and drastically changes the observed isomerization kinetics that appears, in particular, as a red shift of the transient spectra. These results explain the apparent contradictions of the work by Florean et al. [Proc. Natl. Acad. Sci. U.S.A. 106, 10896 (2009)] in the high intensity regime. We are able to show that the difference in observations and interpretation is due to artifacts associated with additional multiphoton-induced photoproducts. At the proper monitoring wavelengths, coherent control in the high intensity regime is clearly observable. The present work highlights the importance of conducting coherent control experiments in the low intensity regime to access information on quantum interference effects along specific reaction coordinates.     

On the utility of S-mesitylsulfinimines for the stereoselective synthesis of chiral amines and aziridines

The synthetic utility of S-mesitylsulfinimines for the synthesis of chiral amines and aziridines was examined through their reactions with Grignard reagents, with the ylides derived from trimethylsulfonium iodide and S-allyl-tetrahydrothiophenium bromide and through an aza-Darzens manifold, affording convenient access to a diverse range of highly substituted chiral amines and aziridines in high yields and excellent stereoselectivities.     

Predictive measure of quality of micromixing

We introduce a predictive measure of micromixing termed quantitative overlap (QO). QO depends on the distribution of reactants throughout the reactor and can be calculated by solving equations of diffusion. We used a bimolecular reaction and a capillary microreactor to experimentally prove that QO is proportional to the product yield.     

Thermal study on electrospun polyvinylpyrrolidone/ammonium metatungstate nanofibers: optimising the annealing conditions for obtaining WO<Subscript>3</Subscript> nanofibers

This article demonstrates how important it is to find the optimal heating conditions when electrospun organic/inorganic composite fibers are annealed to get ceramic nanofibers in appropriate quality (crystal structure, composition, and morphology) and to avoid their disintegration. Polyvinylpyrrolidone [PVP, (C₆H₉NO) _n ] and ammonium metatungstate [AMT, (NH₄)₆[H₂W₁₂O₄₀]·nH₂O] nanofibers were prepared by electrospinning aqueous solutions of PVP and AMT. The as-spun fibers and their annealing were characterized by TG/DTA-MS, XRD, SEM, Raman, and FTIR measurements. The 400–600 nm thick and tens of micrometer long PVP/AMT fibers decomposed thermally in air in four steps, and pure monoclinic WO₃ nanofibers formed between 500 and 600 °C. When a too high heating rate and heating temperature (10 °C min⁻¹, 600 °C) were used, the WO₃ nanofibers completely disintegrated. At lower heating rate but too high temperature (1 °C min⁻¹, 600 °C), the fibers broke into rods. If the heating rate was adequate, but the annealing temperature was too low (1 °C min⁻¹, 500 °C), the nanofiber morphology was excellent, but the sample was less crystalline. When the optimal heating rate and temperature (1 °C min⁻¹, 550 °C) were applied, WO₃ nanofibers with excellent morphology (250 nm thick and tens of micrometer long nanofibers, which consisted of 20–80 nm particles) and crystallinity (monoclinic WO₃) were obtained. The FTIR and Raman measurements confirmed that with these heating parameters the organic matter was effectively removed from the nanofibers and monoclinic WO₃ was present in a highly crystalline and ordered form.