Recent advances in the MS analysis of glycoproteins: Capillary and microfluidic workflows

Recent developments in bioanalytical instrumentation, MS detection, and computational data analysis approaches have provided researchers with capabilities for interrogating the complex cellular glycoproteome, to help gain a better insight into the cellular and physiological processes that are associated with a disease and to facilitate the efforts centered on identifying disease-specific biomarkers. This review describes the progress achieved in the characterization of protein glycosylation by using advanced capillary and microfluidic MS technologies. The major steps involved in large-scale glycoproteomic analysis approaches are discussed, with special emphasis given to workflows that have evolved around complex MS detection functions. In addition, quantitative analysis strategies are assessed, and the bioinformatics aspects of glycoproteomic data processing are summarized. The developments in commercial and custom fabricated microfluidic front-end platforms to ESI- and MALDI-MS instrumentation, for addressing major challenges in carbohydrate analysis such as sensitivity, throughput, and ability to perform structural characterization, are further evaluated and illustrated with relevant examples.     

Artemisinin evaluation in Romanian Artemisia annua wild plants using a new HPLC/MS method

Artemisinin, a sesquiterpene lactone from Artemisia annua L., has received considerable attention in the last few decades as a potent antimalarial drug. Artemisinin has rather low toxicity; it is effective against drug-resistant Plasmodium species and against cerebral malaria. This study reports the development of a rapid and sensitive assay for the quantification of artemisinin in A. annua by reversed phase HPLC/MS. In the selected optimal experimental conditions, artemisinin exhibited a well-defined chromatographic peak with a retention time of 2 ± 0.2 min. The chromatographic signal shows a linear dependence with artemisinin concentration, enabling the use of this signal for artemisinin quantification according to the following regression equation: y = 2665.40x - 14697.61. The correlation coefficient (R(2)) was 0.9989. For every concentration within the range of the standard curve (0.1-2 μg mL(-1)), accuracy was between 95 and 104%. Artemisinin content in Romanian A. annua wild plants varies between 0.17 and 0.21% (dry weight basis).     

Contributions to the analytical chemistry of osmium and ruthenium-IX: the dimercapto derivatives of asymmetric triazine as colour reagents for osmium

The parameters of the reaction of osmium with 3,5-dimercapto-6-(ethylcarboxy)-1,2,4-triazine have been studied and the optimum conditions for the spectrophotometric determination of osmium over the range 0.5-18.0 ppm determined. The coloured product contains the components in the ratio 1:2 metal:ligand.     

On gradient field theories: gradient magnetostatics and gradient elasticity

In this work, the fundamentals of gradient field theories are presented and reviewed. In particular, the theories of gradient magnetostatics and gradient elasticity are investigated and compared. For gradient magnetostatics, non-singular expressions for the magnetic vector gauge potential, the Biot–Savart law, the Lorentz force and the mutual interaction energy of two electric current loops are derived and discussed. For gradient elasticity, non-singular forms of all dislocation key formulas (Burgers equation, Mura equation, Peach–Koehler stress equation, Peach–Koehler force equation, and mutual interaction energy of two dislocation loops) are presented. In addition, similarities between an electric current loop and a dislocation loop are pointed out. The obtained fields for both gradient theories are non-singular due to a straightforward and self-consistent regularization.     

The gauge theory of dislocations: conservation and balance laws

We derive conservation and balance laws for the translational gauge theory of dislocations by applying Noether's theorem. We present an improved translational gauge theory of dislocations including the dislocation density tensor and the dislocation current tensor. The invariance of the variational principle under the continuous group of transformations is studied. Through Lie's infinitesimal invariance criterion we obtain conserved translational and rotational currents for the total Lagrangian made up of an elastic and dislocation part. We calculate the broken scaling current. Looking only on one part of the whole system, the conservation laws are changed into balance laws. Because of the lack of translational, rotational and dilatation invariance for each part, a configurational force, moment and power appears. The corresponding J , L and M integrals are obtained. Only isotropic and homogeneous materials are considered and we restrict ourselves to a linear theory. We choose constitutive laws for the most general linear form of material isotropy. Also we give the conservation and balance laws corresponding to the gauge symmetry and the addition of solutions. From the addition of solutions we derive a reciprocity theorem for the gauge theory of dislocations. Also, we derive the conservation laws for stress-free states of dislocations.     

Spectral Investigation of Phosphorus Compounds in Spinacia Oleracea Using Fourier Transform Infrared Method

The study uses the Fourier transform infrared spectroscopy method to evaluate the influence of phosphogypsum from the soil on the growth and accumulation of nutrients in Spinacia oleracea. Attenuated total reflectance spectra of Spinacia oleracea roots and stems originated from plants cultivated on 28% to 52% phosphogypsum enriched soil have been studied in the 4000–600 cm^?1 area. The structure of the infrared absorption bands for spinach roots and stems and for the soil where plants were grown was analyzed. Thus, it was observed that phosphorus–oxygen bonds contribution can be identified both in roots and stems absorption spectra. The significance of the research is the possibility to use the infrared investigation as rapid technique, particularly useful for agriculture, to study the extraction and assimilation process of the compounds containing phosphorus and nitrogen from the soil in which the spinach seedlings grew. In the case of this study, it was observed that the absorption of phosphorus in the spinach roots and stems has not the same effect. The analysis of obtained data indicated that the assimilation of phosphorus from phosphogypsum enriched soil induces changes in spinach roots structure that are most likely due to an increase synthesis of proteins, rather than to a decrease in carbohydrates quantity.     

Modifications Induced by UV-Vis Irradiation on DNA Extract of Kiwifruit Investigated by Spectroscopic and Statistic Methods

ABSTRACT

Revealing molecular alterations induced on kiwifruit under UV-Vis irradiation requires a discussion of biochemical-cell infrared (IR) fingerprint (900 cm^?1–1800 cm^?1) bands characteristic of nucleic acids. FTIR-ATR spectroscopy and statistics and nondestructive methods for screening exposure effects induced by irradiation were used. There the irradiation influence on the main molecular bonds (i.e., ν(C-C), ν_s(PO₂?) and ν_as(PO₂?)) can be observed. Regression methods were used for statistical investigations. Two categories of variables were used: the absorbance measured at fixed wavenumber variables and the exposure dose. The bivariate correlations, partial correlations, and polynomial regression methods from SPSS were used for statistical investigations. The obtained results show that FTIR-ATR, in correlation with statistics techniques, might be useful to assess immediate radiation and oxidative-induced damage to nucleic acids. In this case IR spectroscopy can be used successfully to study conformational changes during DNA reversible denaturation especially on the sugar-phosphate vibrations domain.     

Dissolution of Cellulose and Lignin with Biobased Ionic Liquids

Journal of Solution Chemistry - Choline-based ionic liquids, involving various alkyl chains lengths and carboxylates derived from biobased acids, have been synthetized with high yields through a...