Complexity of "A-a" knob-hole fibrin interaction revealed by atomic force spectroscopy

During blood vessel injury, fibrinogen is converted to fibrin, a polymer that serves as the structural scaffold of a blood clot. The primary function of fibrin is to withstand the large shear forces in blood and provide mechanical stability to the clot, protecting the wound. Understanding the biophysical forces involved in maintaining fibrin structure is of great interest to the biomedical community. Previous reports have identified the "A-a" knob-hole interaction as the dominant force responsible for fibrin's structural integrity. Herein, biochemical force spectroscopy is used to study knob-hole interactions between fibrin fragments and variant fibrinogen molecules to identify the forces occurring between individual fibrin molecules. The rupture of the "A-a" knob-hole interaction results in a characteristic profile previously unreported in fibrin force spectroscopy with two distinct populations of specific forces: 110 +/- 34 and 224 +/- 31 pN. In the absence of a functional "A" knob or hole "a", these forces cease to exist. We propose that the characteristic pattern represents the deformation of the D region of fibrinogen prior to the rupture of the "A-a" knob-hole bond.     

Designing functionalized porphyrins capable of pseudo-2D self-assembly on surfaces

A crystallography-instructed strategy to highly ordered layering of porphyrins with different topologies on HOPG is developed based on meso-tetraarylporphyrins bearing 2-ethoxyethanol side chains as "sticky ends". These sticky ends are capable of displaying directive hydrogen bonding motifs with the inherent D4h symmetry of the porphyrins. Solvent effects are shown to have an important role in fabricating the adsorption. Metalation and subsequent axial ligation was a key controlling factor in the topology of the layer, leading to pseudo-2D structures on HOPG.     

Preparation of tungsten alkyl alkylidene alkylidyne complexes and kinetic studies of their formation

An equilibrium mixture of alkyl alkylidyne W(CH2SiMe3)3(CSiMe3)(PMe3) (1a) and its bis(alkylidene) tautomer W(CH2SiMe3)2(=CHSiMe3)2(PMe3) (1b) has been found to undergo an alpha-hydrogen abstraction reaction in the presence of PMe3 to form alkyl alkylidene alkylidyne W(CH2SiMe3)(=CHSiMe3)(CSiMe3)(PMe3)2 (2). In the presence of PMe3, the formation of 2 follows first-order kinetics, and the observed rate constant was found to be independent of the concentration of PMe3. The activation parameters for the formation of 2 are Delta H = 28.3(1.7) kcal/mol and Delta S = 3(5) eu. In the presence of PMe2Ph, an equilibrium mixture of W(CH2SiMe3)3(CSiMe3)(PMe2Ph) (3a) and its bis(alkylidene) tautomer W(CH2SiMe3)2(=CHSiMe3)2(PMe2Ph) (3b) was similarly converted to W(CH2SiMe3)(=CHSiMe3)(CSiMe3)(PMe2Ph)2 (4). The observed rate of this reaction was also independent of the concentration of PMe2Ph. These observations suggest a pathway in which the tautomeric mixtures 1a,b and 3a,b undergo rate-determining, alpha-hydrogen abstraction, followed by phosphine coordination, resulting in the formation of the alkyl alkylidene alkylidyne complexes 2 and 4.     

Addition of S-H bonds across electron-deficient olefins catalyzed by well-defined copper(I) thiolate complexes

A series of monomeric (NHC)Cu(SR) (R = Ph or CH2Ph; NHC = N-heterocyclic carbene) complexes have been synthesized and fully characterized including single-crystal X-ray diffraction studies. These complexes catalyze the addition of S-H bonds across electron-deficient olefins to regioselectively produce "anti-Markovnikov" products.     

Entanglement generation by Fock-state filtration

We demonstrate a Fock-state filter which is capable of preferentially blocking single photons over photon pairs. The large conditional nonlinearities are based on higher-order quantum interference, using linear optics, an ancilla photon, and measurement. We demonstrate that the filter acts coherently by using it to convert unentangled photon pairs to a path-entangled state. We quantify the degree of entanglement by transforming the path information to polarization information; applying quantum state tomography we measure a tangle of T=(20+/-9)%.     

Speech enhancement using the modified phase-opponency model

In this paper we present a model called the Modified Phase-Opponency (MPO) model for single-channel speech enhancement when the speech is corrupted by additive noise. The MPO model is based on the auditory PO model, proposed for detection of tones in noise. The PO model includes a physiologically realistic mechanism for processing the information in neural discharge times and exploits the frequency-dependent phase properties of the tuned filters in the auditory periphery by using a cross-auditory-nerve-fiber coincidence detection for extracting temporal cues. The MPO model alters the components of the PO model such that the basic functionality of the PO model is maintained but the properties of the model can be analyzed and modified independently. The MPO-based speech enhancement scheme does not need to estimate the noise characteristics nor does it assume that the noise satisfies any statistical model. The MPO technique leads to the lowest value of the LPC-based objective measures and the highest value of the perceptual evaluation of speech quality measure compared to other methods when the speech signals are corrupted by fluctuating noise. Combining the MPO speech enhancement technique with our aperiodicity, periodicity, and pitch detector further improves its performance.     

Characterization of AhR agonist compounds in roadside snow

Aryl hydrocarbon receptor (AhR) agonistic contaminants were identified in roadside snow samples. Snow was collected in Oslo, Norway, and compared to a background sample collected from a mountain area. The water and particulate fractions were analysed for AhR agonists using a dioxin-responsive, chemically activated luciferase expression (CALUX) cell assay and by gas chromatography coupled to high-resolution time-of-flight mass spectrometry with targeted analysis for polycyclic aromatic hydrocarbons (PAHs) and broad-spectrum non-target analysis. The AhR agonist levels in the dissolved fractions in the roadside samples were between 15 and 387 pg/L CALUX toxic equivalents (TEQ(CALUX)). An elevated AhR activity of 221 pg TEQ(CALUX) per litre was detected in the mountain sample. In the particle-bound fractions, the TEQ(CALUX) was between 1,350 and 7,390 pg/L. One possible explanation for the elevated levels in the dissolved fraction of the mountain sample could be the presence of black carbon in the roadside samples, potentially adsorbing dioxin-like compounds and rendering them unavailable for AhR interaction. No polychlorinated dibenzodioxins and dibenzofurans or polychlorinated biphenyls were detected in the samples; the occurrence of PAHs, however, explained up to 9 % of the AhR agonist activity in the samples, whilst comprehensive two-dimensional gas chromatography coupled to mass spectrometry GCxGC-ToF-Ms identified PAH derivatives such as polycyclic aromatic ketones and alkylated, nitrogen sulphur and oxygen PAHs in the particle fractions. The (large) discrepancy between the total and explained activity highlights the fact that there are other as yet unidentified AhR agonists present in the environment.     

Current Progress in the Chemoenzymatic Synthesis of Natural Products

Natural products, with their array of structural complexity, diversity, and biological activity, have inspired generations of chemists and driven the advancement of techniques in their total syntheses. The field of natural product synthesis continuously evolves through the development of methodologies to improve stereoselectivity, yield, scalability, substrate scope, late-stage functionalization, and/or enable novel reactions. One of the more interesting and unique techniques to emerge in the last thirty years is the use of chemoenzymatic reactions in the synthesis of natural products. This review highlights some of the recent examples and progress in the chemoenzymatic synthesis of natural products from 2019–2022.     

Phosphoramidate‐Supported Cp*IrIII Aminoborane H2B=NR2 Complexes: Synthesis,Structure, and Solution Dynamics

Reaction of aminoboranes H₂B=NR₂ (R=iPr or Cy) with the cationic Cp*Ir^III phosphoramidate complex [IrCp*{κ²‐N,O‐Xyl(N)P(O)(OEt)₂}][BAr^F₄] generates the aminoborane complexes [IrCp*(H){κ¹‐N‐η²‐HB‐Xyl(N)P(OBHNR₂)(OEt)₂}][BAr^F₄] (R=iPr or Cy) in which coordination of a P=O bond with boron weakens the B=N multiple bond. For these complexes, solution‐ and solid‐state, as well as DFT computational techniques, have been employed to substantiate B?N bond rotation of the coordinated aminoborane.