Sample sonication after trichloroacetic acid precipitation increases protein recovery from cultured hippocampal neurons, and improves resolution and reproducibility in two-dimensional gel electrophoresis

Protein precipitation with TCA followed by acetone washing is frequently used to clean samples before 2-DE. However, the difficulty in solubilizing TCA-precipitated proteins causes some variability in 2-D gels and makes it difficult to detect some proteins. In this work we show that sonication of the samples, after TCA precipitation followed by elution in sample buffer, increases total protein recovery, and improves reproducibility and matching ratios between gels when analyzed by specialized software.     

A Simple Road for the Transformation of Few-Layer Graphene into MWNTs

We report the direct formation of multiwalled carbon nanotubes (MWNT) by ultrasonication of graphite in dimethylformamide (DMF) upon addition of ferrocene aldehyde (Fc-CHO). The tubular structures appear exclusively at the edges of graphene layers and contain Fe clusters. Fc in conjunction with benzyl aldehyde, or other Fc derivatives, does not induce formation of NT. Higher amounts of Fc-CHO added to the dispersion do not increase significantly MWNT formation. Increasing the temperature reduces the amount of formation of MWNTs and shows the key role of ultrasound-induced cavitation energy. It is concluded that Fc-CHO first reduces the concentration of radical reactive species that slice graphene into small moieties, localizes itself at the edges of graphene, templates the rolling up of a sheet to form a nanoscroll, where it remains trapped, and finally accepts and donates unpaired electron to the graphene edges and converts the less stable scroll into a MWNT. This new methodology matches the long held notion that CNTs are rolled up graphene layers. The proposed mechanism is general and will lead to control the production of carbon nanostructures by simple ultrasonication treatments.     

Elimination of motion and pulsation artifacts using BLADE sequences in knee MR imaging

The purpose of this study is to evaluate the ability of proton density (PD)-BLADE sequences in reducing or even eliminating motion and pulsatile flow artifacts in knee magnetic resonance imaging examinations. Eighty consecutive patients, who had been routinely scanned for knee examination, participated in the study. The following pairs of sequences with and without BLADE were compared: (a) PD turbo spin echo (TSE) sagittal (SAG) fat saturation (FS) in 35 patients, (b) PD TSE coronal (COR) FS in 19 patients, (c) T2 TSE axial in 13 patients and (d) PD TSE SAG in 13 patients. Both qualitative and quantitative analyses were performed based on the signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR) and relative contrast (ReCon) measures of normal anatomic structures. The qualitative analysis was performed by experienced radiologists. Also, the presence of image motion and pulsation artifacts was evaluated. Based on the results of the SNR, CRN and ReCon for the different sequences and anatomical structures, the BLADE sequences were significantly superior in 19 cases, whereas the corresponding conventional sequences were significantly superior in only 6 cases. BLADE sequences eliminated motion artifacts in all the cases. However, motion artifacts were shown in (a) six PD TSE SAG FS, (b) three PD TSE COR FS, (c) three PD TSE SAG and (d) two T2 TSE axial conventional sequences. In our results, it was found that, in PD FS sequences (sagittal and coronal), the differences between the BLADE and conventional sequences regarding the elimination of motion and pulsatile flow artifacts were statistically significant. In all the comparisons, the PD FS BLADE sequences (coronal and sagittal) were significantly superior to the corresponding conventional sequences regarding the classification of their image quality. In conclusion, this technique appears to be capable to potentially eliminate motion and pulsatile flow artifacts in MR images.     

Separation algorithms for 0-1 knapsack polytopes

Valid inequalities for 0-1 knapsack polytopes often prove useful when tackling hard 0-1 Linear Programming problems. To generate such inequalities, one needs separation algorithms for them, i.e., routines for detecting when they are violated. We present new exact and heuristic separation algorithms for several classes of inequalities, namely lifted cover, extended cover, weight and lifted pack inequalities. Moreover, we show how to improve a recent separation algorithm for the 0-1 knapsack polytope itself. Extensive computational results, on MIPLIB and OR Library instances, show the strengths and limitations of the inequalities and algorithms considered.     

Statistical copolymers of norbornene and 5‐vinyl‐2‐norbornene by a ditungsten complex mediated ring‐opening metathesis Polymerization: Synthesis,thermal properties,and kinetics of thermal decomposition

Statistical copolymers of norbornene (NBE) with 5‐vinyl‐2‐norbornene (VNBE) were prepared by ring‐opening metathesis polymerization, employing the triply bonded ditungsten complex Na[W₂(μ‐Cl)₃Cl₄(THF)₂].(THF)₃. NMR measurements revealed that the side vinyl groups of the VNBE monomer remain intact during the copolymerization reaction. The reactivity ratios were estimated using the Finemann–Ross (FR), the inverted FR, and the Kelen–Tüdos graphical methods. Structural parameters of the copolymers were obtained by calculating the dyad sequence fractions, which were derived using the monomer reactivity ratios. The glass transition temperatures, T_g, of the copolymers were measured by differential scanning calorimetry measurements and were examined in the frame of several theoretical equations allowing the prediction of these T_g values. The best fit was obtained using methods that take into account the monomer sequence distribution of the copolymers. Finally, the kinetics of the thermal decomposition of the copolymers was studied by thermogravimetric analysis in the frame of the Ozawa–Flynn–Wall and Kissinger methods. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2013 , 51, 4835–4844     

Variation in sulfation pattern of galactosaminoglycan containing proteoglycans is associated with the development of uterine leiomyoma

The variations in sulfation patterns of glycosaminoglycans (GAGs) present in human normal myometrium and uterine leiomyoma were characterized following specific enzymic treatments and analysis by high-performance capillary electrophoresis (HPCE). Differences in the disaccharide composition of galactosaminoglycans (GalAGs) between normal myometrium and uterine leiomyoma were found. The results of this study suggest that the development of uterine leiomyoma is closely related not only to quantitative changes in the amount of GAGs but also in the sulfation of GalAGs. These differences may be attributed to increased synthesis of fibrotic connective tissue and deposition of collagen.     

Über die Wirkung von Auxochromen in Flavyliumsalzen,I. 7-Hydroxy-flavyliumsalze

7-Hydroxy-flavylium salts absorb at longer wave lengths than the corresponding flavylium salts, yet auxochromes in 4′-position have a less bathochromic effect in the 7-hydroxy-flavylium series than in the flavylium series. As a result the absorption maxima converge. 4′-Dimethylamino derivatives show a convergence of 22 nm.     

157-nm Laser ablation of polymeric layers for fabrication of biomolecule microarrays

A new methodology for protein microarray fabrication is proposed based on the ablation of polymer film using laser at 157 nm (F₂). The polymer has been selected among others with the criterion of negligible protein adsorption. Improved results have been obtained by pretreatment of the polymer surface with an inert protein. The use of 157-nm laser radiation allowed very good depth control during the polymeric layer ablation process. In addition the importance of laser ablation at 157 nm is based on the fact that irradiated surfaces indicate limited chemical change due to the fact that laser ablation at 157 nm is only photochemical, thus avoiding excessive surface heating and damage. Results of protein microarray fabrication are presented to illustrate the viability of the proposed method.     

Thermal transformation of arylamidoximes in the presence of phosphorus ylides. Unexpected formation of 3‐aryl‐5‐arylamino‐1,2,4‐oxadiazoles

The unexpected formation of 3‐aryl‐5‐arylamino‐1,2,4‐oxadiazoles took place, when arylamidoximes reacted thermally with ethoxycarbonylmethylene(triphenyl)phosphorane. Furoxans, nitriles, ureas were also isolated suggesting aryl cyanide oxides as intermediates. 3‐Aryl‐5‐arylamino‐1,2,4‐oxadiazoles were formed via an aryl migration from the carbon atom to the nitrogen atom of the amidoxime, and the structure was further proved from the X‐ray crystal structure of the N‐(4‐bromobenzoyl) derivative.     

An unexpected base-induced rearrangement of tritylamine

An unexpected rearrangement was observed during the treatment of tritylamine with n-butyllithium, leading to the formation of an imine.